Induction of Cyclooxygenase-2 Expression by Hepatitis B Virus Depends on Demethylation-associated Recruitment of Transcription Factors to the Promoter
Virology Journal volume 8, Article number: 118 (2011)
The hepatitis B virus (HBV) is a major etiological factor of inflammation and damage to the liver resulting in hepatocellular carcinoma. Transcription factors play important roles in the disordered gene expression and liver injury caused by HBV. However, the molecular mechanisms behind this observation have not been defined.
In this study, we observed that circulating prostaglandin (PGE) 2 synthesis was increased in patients with chronic hepatitis B infection, and detected elevated cyclooxygenase (COX)-2 expression in HBV- and HBx-expressing liver cells. Likewise, the association of HBx with C/EBPβ contributed to the induction of COX-2. The COX-2 promoter was hypomethylated in HBV-positive cells, and specific demethylation of CpG dinucleotides within each of the two NF-AT sites in the COX-2 promoter resulted in the increased binding affinity of NF-AT to the cognate sites in the promoter, followed by increased COX-2 expression and PGE2 accumulation. The DNA methylatransferase DNMT3B played a key role in the methylation of the COX-2 promoter, and its decreased binding to the promoter was responsible for the regional demethylation of CpG sites, and for the increased binding of transcription factors in HBV-positive cells.
Our results indicate that upregulation of COX-2 by HBV and HBx is mediated by both demethylation events and recruitment of multiple transcription factors binding to the promoter.
Human hepatitis B virus (HBV) is a non-cytopathic partially double-stranded DNA virus that causes acute and chronic liver disease. HBV infection affects approximately 350 million people in the world , and is strongly associated with the development of liver cirrhosis and hepatocelluar carcinoma (HCC) . Even though multiple factors have been implicated in HBV-associated pathogenesis and carcinogenesis, the exact molecular mechanism underlying chronic HBV-induced liver cancer remains largely unknown .
Data from HBV-infected individuals and in vitro experiments have shown that activation of the intrahepatic cytokine network may play an important role in pathogenesis of acute and chronic liver inflammation and injury caused by HBV infection. Expression of tumor necrosis factor-α [4, 5], interleukin-6 , inducible nitric oxide synthase [7, 8] and cyclooxygenase-2 [8, 9] are increased in response to HBV infection, or are involved in HBV-associated HCC development.
Cyclooxygenase-2 (COX-2) is an inducible COX isoform required for the biosynthesis of prostaglandins, such as PGE2, and is primarily involved in pathological processes such as inflammation, fibrogenesis, and carcinogenesis . Increases in COX-2 and PGE2 have been reported in chronic hepatitis, liver cirrhosis, and hepatocellular carcinoma [8, 9]. COX-2 is induced at the transcriptional level by a variety of stimuli including cytokines, mitogens, and growth factors [10, 11]. Its promoter region contains a TATA box, an E box, and binding sites for a number of transcription factors such as NF-κB, NF-AT/AP1, NF-IL6/C/EBP, and CREB [10–13].
It is well accepted that viral proteins stimulate COX-2 expression, such as latent membrane protein 1 of Epstein-Barr virus (EBV) , Gp120  and Tat of human immunodeficiency virus (HIV) , and core and NS5A of human hepatitis C virus (HCV) . We have previously demonstrated that NS3 of HCV  and the spike and nucleocapsid proteins of SARS-associated coronavirus (SARS-CoV) [19, 20] induce COX-2 expression in virus infected cells. Upregulation of COX-2 was also observed in liver tissues chronically infected with HBV . Recent studies have shown that HBx, a 17.5 kDa multifunctional transactivator encoded by the HBV genome , is likely the most important determinant of COX-2 induction in human cells infected with HBV. Importantly, this of COX-2 expression may contribute to the pathogenesis of HBV .
DNA methylation and histone modifications represent the major epigenetic mechanisms implicated in the regulation of gene transcription in mammals. DNA methylation is a predominant mechanism employed to inactivate relevant genes during tumorigenesis associated with HCC. DNA methylation occurs at carbon 5 of cytosine, primarily in the context of the CpG dinucleotide. Recent findings support the hypothesis that hypomethylation of the DNA surrounding the proximal promoter region is a prerequisite for gene activation, whereas hypermethylation leads to gene silencing . Mechanistically, there are a number of ways in which DNA methylation can repress transcription. For example, many of the trans factors known to bind to sequences containing CpG dinucleotides do not bind when the CpG doublets are methylated . Identification of methylated regions in the COX-2 promoter during HBV infection will aid in understanding the mechanisms by which this gene is regulated.
To study the influence of HBV on the expression of COX-2, we first examined the amount of PGE2 in the peripheral blood serum of patients with chronic hepatitis B. We also analyzed the mechanism of COX-2 upregulation in HBV-positive cells as well as in HBx-transfected cells. Our results showed that COX-2 expression was induced in both HBV-positive and HBx-expressing cells, and that activation of the COX-2 promoter by HBx depended on C/EBP and CREB binding sites, in which C/EBPβ played an important role. HBx directly interacted with C/EBPβ, and enhanced its binding to the COX-2 promoter. DNA methylation analysis revealed that global hypomethylation of the COX-2 promoter and specific demethylation of the NF-AT binding sites occurred in HBV-positive cells. Among the three DNA methyltransferases (DNMTs) present in mammalian cells, DNMT3B played a key role in COX-2 promoter methylation, and its decreased affinity for the promoter was responsible for the specific regional demethylation and the increased binding of transcription factors. Together, this study shows that both aberrant epigenetic modifications and transcription factors contribute to the HBV-induced COX-2 expression.
Elevated serum PGE2 in HBV patients
High level expression of circulating PGE2 was observed in patients with chronic HBV infection. As shown in Table 1 the serum levels of PGE2 were significantly higher in patients with chronic hepatitis B infection in comparison with healthy control individuals (mean ± SEM 1393.9 ± 834.5 vs. 161.6 ± 79.2 pg/mL P < 0.01), suggesting that HBV infection resulted in upregulation of COX-2.
HBV and HBx expression upregulates COX-2 expression and COX-2 promoter activity
Simultaneous expression of HBx and COX-2 has been observed in liver specimens from chronic HBV patients . To test if expression of HBV influences COX-2, expression of COX-2 in HepG2 human hepatoma cells was compared with that in HepG2.2.15 cells, which contain an integrated HBV genome. We analyzed COX-2 mRNA expression by quantitative RT-PCR, and detected an increase in COX-2 mRNA in HepG2.2.15 cells as compared to HepG2 cells, which do not express HBV (Figure 1A). The amount of COX-2 protein was next estimated by Western blot analysis, and endogenous COX-2 protein was increased in HepG2.2.15 cells (Figure 1A), suggesting that the presence of HBV regulates COX-2 expression. To test if the upregulation of COX-2 correlates with the expression of HBx, a reporter plasmid in which the COX-2 promoter was cloned upstream of the luciferase gene (pCOX-2-Luc) was transfected with pHBV-1.2 or pHBV-1.2*7 and the control plasmid pRL-TK into HepG2 human hepatoma cells, which support HBV replication. pHBV-1.2 contains 1.2-fold length of the HBV genome and retains the ability to produce mature HBV virions. pHBV-1.2*7 is an HBV mutant that does not express HBx. Luciferase activity was measured in each sample, and results showed that wild-type HBV activated COX-2 promoter whereas the HBV mutant failed to induce COX-2 promoter activation (Figure 1B). Since expression of luciferase in these cells could only come from activity at the COX-2 promoter in the reporter plasmid, it is likely that COX-2 expression is regulated by HBx at the level of transcription. We next transfected HepG2 cells with pCOX-2-Luc and increasing concentrations of the pCMV-HBx plasmid, and found that HBx stimulated the COX-2 promoter in a dose-dependent manner (Figure 1C). To further confirm the effects of HBx on COX-2 expression, the pCMV-HBx plasmid was transiently transfected into HepG2 cells. qRT-PCR and western blot analysis showed elevated level of COX-2 mRNA and protein in HBx transfeted cells (Figure 1D).
COX-2 is a key enzyme involved in prostaglandin synthesis, as it converts arachidonic acid to PGE2 and other prostanoids involved in inflammation and tumor development [10, 27]. Elevated COX-2 activity in HBV or HBx expressing cells was next monitored by measuring the accumulation of secreted PGE2 in culture supernatants from HepG2.2.15 cells, or from HepG2 cells transfected with pCMV-HBx. As shown in Figure 1E, the concentration of PGE2 was higher in HBV-positive or HBx-expressing cells as opposed to control cells. We next confirmed the specificity of COX-2 regulation for PGE2 secretion by treating the cells with NS-398, a selective inhibitor of COX-2. We found that treatment with NS-398 significantly reduced the amount of secreted PGE2 as compared to untreated cells, confirming the specific relationship between HBV- and HBx-induced COX-2 expression and PGE2 secretion (Figure 1E).
To show the consistency of the above results with clinical manifestations of hepatitis B, we performed qRT-PCR analysis of peripheral blood mononuclear cells (PBMC) from hepatitis B patients. Results showed elevated levels of COX-2 mRNA in PBMC of these people compared with healthy individuals (Figure 1F).
C/EBPβ plays a role in HBx-induced COX-2 promoter activation
C/EBP, NF-κB, and CRE are important regulators of the COX-2 promoter [10–13]. To identify the cis-regulatory elements in the COX-2 promoter that are responsive to HBx, mutant reporter plasmids were constructed in which the binding site of these factors was altered in the COX-2 promoter. These altered promoters were cloned upstream of the luciferase gene, and were transfected into HepG2 cells with pCMV-HBx. Deletion or mutation of the NF-κB binding sites had little effect on the activation of the COX-2 promoter by HBx (Figure 2A and 2B), which is consistent with prior studies . A single mutation in the C/EBP, CRE, or double mutation in both, nearly abolished the activation of the COX-2 promoter by HBx (Figure 2B). These results show that the C/EBP and CRE binding sites are required for COX-2 promoter activation by HBx, suggesting that HBx induces COX-2 expression in a C/EBP- and CRE-dependent manner.
The C/EBP transcription factor family contains at least six members (C/EBPα-C/EBPζ). C/EBPβ is widely involved in inflammation and regulates gene transcription in response to a variety of stimuli [28, 29]. We next investigated the role of C/EBPβ in the activation of COX-2 by HBx. At least three isoforms of C/EBPβ, LAP* (38 kDa), LAP (35 kDa), and LIP (20 kDa) are constitutively expressed in a variety of cell types. LAP and LAP* both contain a transactivation domain and a DNA binding domain, whereas LIP only contains a DNA binding domain [28–30]. HepG2 cells were cotransfected with pCOX-2-Luc, pCMV-HBx, and pCMV-LAP or pCMV-LIP. Luciferase activity in each sample was measured after 24 hours, and the expression of each cognate protein was confirmed by Western blot. A synergistic effect between HBx and LAP on the COX-2 promoter was observed (Figure 2C). As expected, LIP inhibited HBx-induced COX-2 promoter activation (Figure 2D), likely due to the absence of a DNA-binding domain. These data indicate that HBx and C/EBPβ cooperatively activate COX-2 transcription.
HBx directly interacts with C/EBPβ and stimulates binding of C/EBPβ to the COX-2 promoter
As a transcription coactivator, HBx interacts with several members of the basal transcriptional apparatus. We next tested if HBx directly interacts with C/EBPβ, as it is a component of this apparatus. HepG2 cells were transfected with plasmids encoding GFP-HBx or GFP alone, and cell lysates were immunoprecipitated with anti-GFP antibodies followed by Western blotting with antibody specific for C/EBPβ. Our results showed that HBx co-immunoprecipitated with endogenous C/EBPβ (Figure 3A), confirming an interaction between HBx and the basal transcriptional machinery.
To further confirm an interaction between HBx and C/EBPβ, we employed the mammalian two-hybrid assay in HepG2 cells. We constructed a vector containing the activation domain of VP16 fused with the N terminus of LAP (pVP16-LAP), and a vector containing HBx fused at its N terminus to the DNA-binding domain of Gal4 (pM-HBx). In this assay, if an interaction occurs between HBx and LAP, the activation domain of VP16 will be brought into contact with its DNA binding domain, thus inducing transcription of the luciferase gene in the pG5-Luc reporter plasmid. HepG2 cells were transfected with these plasmids, in addition to the control plasmid pRL-TK, and our results showed that luciferase expression in cells transfected with both pM-HBx and pVP16-LAP was much higher than in control cells (Figure 3B), confirming a direct interaction between HBx and C/EBPβ.
Prior studies have suggested that HBx may interact with bZip factors through the bZip domain, which promotes the binding to and activation of target promoters . We therefore used EMSA analyses to investigate the possibility that C/EBP factors activated by HBx bind DNA. Nuclear extracts were prepared from HepG2 and HepG2.2.15 cells (Figure 3C), or from HepG2 cells transfected with pCMV-HBx (Figure 3D), and were incubated with a 32P-labeled probe representing the C/EBP binding site from the COX-2 promoter. Binding of nuclear factors to the probe was significantly increased in HepG2.2.15 and in HBx-expressing cells (Figure 3C, lanes 2 and 3, and Figure 3D, lanes 2 and 3). This interaction was eliminated when unlabeled probe was included in the sample (Figure 3C and 3D, lane 4), but was not affected by the addition of a C/EBP mutant probe (Figure 3C and 3D, lane 5). Supershifted complexes were observed when C/EBPβ antibody was added (Figure 3C, lane 6), confirming that HBx induces the binding of C/EBPβ to the COX-2 promoter.
We next confirmed the HBx-induced C/EBPβ binding to the COX-2 promoter using chromatin immunoprecipitation assays (ChIP). Chromatin fragments were prepared from HepG2 cells transfected with pCMV-HBx, and were immunoprecipitated with C/EBPβ antibody. The COX-2 promoter region, consisting of nucleotides -155 to -2 relative to the transcription start site and containing C/EBP binding sequences, was amplified from the chromatin precipitates by PCR. We observed that the amount of C/EBPβ bound to the COX-2 promoter was higher in the presence of HBx (Figure 3E, lane 3) as opposed to cells not expressing HBx (Figure 3E, lane 4). Taken together, these data suggest that HBx stimulates the binding of C/EBPβ to the COX-2 promoter.
Demethylation activates COX-2 promoter activity in HBV-positive cells
HBV infection and expression of HBx cause aberrant methylation of tumor gene promoters , and the demethylating agent 5-aza-CdR has been previously used to investigate the role of methylation on gene expression [33, 34]. Here, HepG2 cells were transfected with pCOX-2-Luc and pRL-TK, and 5-aza-CdR was added to a final concentration of 1, 2, or 4 μM after 6 hours. At 24 and 48 hours post-transfection, cells were harvested for qRT-PCR, or Western blot and luciferase assays, respectively. As shown in Figure 4A, the addition of 5-aza-CdR stimulated both promoter activity and the expression level of COX-2 in a dose-dependent manner.
We next used bisulfate sequencing to obtain more precise information concerning the methylation status of the COX-2 promoter, as this method permits high sensitivity mapping of methylated cytosine residues . As shown in Figure 4B, the COX-2 promoter was sequenced from genomic DNA isolated from HepG2 cells, from nucleotides -204 to +57, and was found to contain 11 methylatable CpG sites. Bisulfite-modified genomic DNA was then PCR amplified for the COX-2 promoter, and the products were cloned and sequenced. The percentage of methylated CpGs was significantly lower in HepG2.2.15 cells (35.7%) than in HepG2 cells (59.1%) (Figure 4C). Importantly, two known NF-AT motifs (-73 and -165), both of which contain a CpG site, were demethylated on the COX-2 promoter in HBV-expressing HepG2.2.15 cells, indicating that site-specific demethylation of NF-AT sites are essential for NF-AT binding and COX-2 promoter activation.
We next tested the influence of methylation on the affinity of NF-AT to its binding motif on the COX-2 promoter. We performed EMSA using nuclear extracts from HepG2.2.15 cells and a NF-AT probe spanning nucleotides -85 to -66 of the COX-2 promoter. As shown in Figure 4D, methylation of these nucleotides inhibited the formation of DNA-protein complexes, suggesting that the binding affinity between NF-AT and the COX-2 promoter after demethylation of the CpG dinucleotide on its binding motif was enhanced. Taken together, these results suggest that hypomethylation of the COX-2 promoter, especially at the NF-AT binding sites, activates COX-2 promoter activity in HBV-expressing cells.
DNMT3B plays a role in COX-2 promoter methylation
In mammalian cells, precise somatic DNA methylation patterns are established during gametogenesis and early embryogenesis by three known DNA methytransferases (DNMT), specifically DNMT1, DNMT3A, DNMT3B . All of these DNMTs are overexpressed in cancers . To test if HBV initiates transcription by demethylation, we examined potential differences in DNMT activity in HepG2 and HepG220.127.116.11 cells (Figure 5A). We found that the activity of total cellular DNMTs were increased in HepG18.104.22.168 cells, but was decreased in the nucleus, suggesting that HBV expression attenuates the activity of nuclear DNMTs which are involved in gene regulation directly.
To determine which DNMT is involved in activating the COX-2 promoter, HepG2 cells were transfected with pCOX-2-Luc alone or with siRNA specific for DNMT1, DNMT3A, or DNMT3B. As shown in Figure 5B, COX-2 promoter activity was downregulated after knock-down of DNMT3A, and was upregulated by knock-down of DNMT3B. Co-transfection of DNMT expression plasmids with pCOX-2-Luc revealed that DNMT3B decreased COX-2 promoter activity in a dose-dependent manner, whereas DNMT3A increased in activity (Figure 5C). We next investigated the recruitment of these three DNMTs to the COX-2 promoter by ChIP assay. Chromatin fragments were prepared from HepG2 and HepG2.2.15 cells and were immunoprecipitated with antibodies specific for DNMT1, DNMT3A, or DNMT3B. The COX-2 promoter was then amplified by PCR, and we found that DNMT3B binding to the COX-2 promoter was reduced in HBV-expressing HepG2.2.15 cells, whereas that of DNMT3A and DNMT1 was increased (Figure 5D). Same results were shown in pHBV-1.2 transfected HepG2 cells (Figure 5D). A prior study has shown diminished expression of DNMT3B and increased expression of DNMT1 and 3A in HBx-expressing cells . So the different DNA binding affinities may due to different expressions of DNMTs. These findings, combined with previous results that the COX-2 promoter is demethylated in HBV-expressing cells, suggest that DNMT3B but not DNMT1 or DNMT3A plays a key role in COX-2 promoter methylation, and that the decreased activity of DNMT3B in the nucleus is likely responsible for hypomethylation of the COX-2 promoter.
In this study, we observed significant increases in PEG2 synthesis in patients with chronic hepatitis B infection, and also detected elevated COX-2 expression in HBV and HBx-expressing liver cells. We demonstrated a previously unrecognized mechanism of COX-2 regulation, where demethylation-linked recruitment of multiple transcription factors to the COX-2 promoter activated HBV-induced COX-2 expression. Demethylation of CpG dinucleotides within the NF-AT binding sites in the COX-2 promoter resulted in the increased binding affinity of NF-AT to the cognate sites in the promoter, followed by increased COX-2 expression and PGE2 accumulation. The association of HBx with C/EBPβ also contributed to the induction of COX-2. Likewise, DNMT3B played a key role in the methylation of the COX-2 promoter, as the reduced binding between DNMT3B and the COX-2 promoter was responsible for the regional demethylation of the CpG sites, and for the increased binding of transcription factors in HBV-positive cells.
COX-2, the inducible isoform of COX, is highly expressed in response to various pro-inflammatory stimuli and other cellular stresses [10, 11], and previous studies have shown increased levels of COX-2 in a variety of human cancers . Importantly, overexpression of COX-2 is closely linked to viral infection [14–17]. Chronic infection with HBV or HCV is the leading cause of liver cancer [1–3], and elevated expression of COX-2 has been described in different liver cirrhosis animal models and liver tissue from cancer patients with chronic HBV or HCV infections [8, 9, 17, 21]. HBx is a transcriptional activator that is required for viral infection and contributes to HBV-associated hepatocarcinogenesis . Accumulating evidence suggests that HBx activates a large number of cellular genes related to HBV-associated HCC, including the COX-2 gene [22, 40]. Coexpression of HBx and COX-2 was detected in chronic liver diseases associated with HBV infection , and HBx also promotes tumor cell invasion by inducing membrane type 1 matrix metalloproteinase and COX-2 . However, the molecular details of COX-2 activation during chronic HBV infection remain to be defined.
It has been well established that NF-κB, C/EBP, and CREB are the primary transcription factors responsible for the regulation of COX-2 expression [10–13]. In this study we demonstrated that the C/EBP and CRE binding sites, but not those of NF-κB, were critical for HBx-induced COX-2 promoter activation. It is possible that NF-κB might be involved in COX-2 expression, but that it is not directly responsible for that induced by HBx.
We investigated the effect of HBx and the C/EBPβ isoform on COX-2 promoter activity, as C/EBPβ is widely involved in inflammation and cellular proliferation of a number of cell types, including hepatocytes, and regulates gene transcription in response to a varity of stimuli [28, 29]. We found that the effects of different isoforms of C/EBPβ played diverse roles in this process. LAP (transcription activator) and HBx had a synergistic effect on COX-2 promoter activation, whereas LIP (transcription repressor) led to a decrease in HBx-induced COX-2 expression. These data suggest that C/EBPβ, cooperatively with HBx, activates COX-2 transcription through the transactivation domain of C/EBPβ. Likewise, bZip transcription factors, such as CREB and C/EBP, were reported to interact with HBx and target a variety of promoters [31, 40, 41]. We detected a direct interaction between HBx and C/EBPβ, which may contribute to the reinforcement of C/EBPβ binding to the COX-2 promoter, and the subsequent upregulation of COX-2 expression.
Others have confirmed a direct correlation between the expression of a given gene and its methylation status , and previous studies have proposed promoter methylation as a mechanism to regulate COX-2 expression in tumors [43–45]. Likewise, other studies have shown that DNA methylation of certain promoters is associated with HBV infection . Since many of the trans factors known to bind to sequences containing CpG dinucleotides do not bind when such regions are methylated, we looked for relationships between transcription factor binding and aberrant epigenetic modifications in the COX-2 promoter during HBV infection. Bisulfite sequencing analysis of the CpG island in the promoter (nucleotides -204 to +57) revealed the hypomethylation of the COX-2 promoter in HBV-expressing cells. More importantly, demethylation of two NF-AT motifs, which contained CpG sites, was detected in these cells, and EMSA data indicated a higher affinity of NF-AT for the demethylated motif of the COX-2 promoter. As a previous report found that HBx activates the COX-2 promoter in an NF-AT dependent manner , our results describe a possible mechanism for the role of NF-AT in this process. Considering the complex interactions of HBx, C/EBPβ and NF-AT, demethylation of NF-AT sites might lead to the binding of different trans factors. These results suggest a potential mechanism for the C/EBPβ- and NF-AT-dependent COX-2 activation by HBV and HBx.
DNMT1 is activated by the Ras-AP-1 signaling pathway , Hypermethylation of tumor suppressor genes are mediated by DNMT3A or DNMT3B, and diminished expression of DNMT3B was detected in HBx-expressing liver cell lines, resulting in genomic hypomethylation . We investigated the role of these three DNMTs in the epigenetic modifications of the COX-2 promoter. We found that DNMT3B but not DNMT1 or DNMT3A was critical for methylation of the COX-2 promoter, and ChIP assays showed that the binding of DNMT3B to the COX-2 promoter was decreased in HBV-expressing cells. A recent study demonstrated the interaction of HBx with DNMT3A and unraveled a possible mechanism involved in HBx-mediated epigenetic modifications and gene regulation . In our study, we investigated the role of three DNMTs (DNMT1, DNMT3A, DNM3B) in the epigenetic modifications of the COX-2 promoter through overexpression and siRNA technology. Considering both the binding of DNMT3B and the total DNMTs activities in the nucleus of HBV-expressing cells were decreased, our results indicate that DNMT3B but not DNMT1 or DNMT3A plays a major role in COX-2 promoter methylation. The increased binding of DNMT1 and DNMT3A to COX-2 promoter in HBV-expressing cells indicates the complex situation in HBV-mediated epigenetic modifications and gene regulation. It is possible that DNMT3A may play a minor role in controlling COX-2 expression through another mechanism. Other researches have showed the importance of mitochondrial pathway in HBx-induced COX-2 expression . We are more concerned about the aberrant epigenetic modifications induced by HBx and its role as a transcriptional coactivator in HBV induced COX-2 expression.
All the data above are consistent with the finding that the COX-2 promoter is hypomethylated in HBV-expressing cells, and suggests a possible mechanism for transcriptional activation of COX-2 by HBV (Figure 6). In normal cells, the COX-2 promoter is hypermethylated and transcription repressors, such as DNMT3B, bind to the methylated CpG sites and repress its activity. After HBV infection, the expression of the virus and HBx trigger demethylation of the COX-2 promoter by down-regulating DNMT3B, which is responsible for the methylation of the promoter. Methylation relieves repression of the promoter and transcription factors such as NF-AT and C/EBPβ are able to bind. Interactions between HBx and C/EBPβ, NF-AT enhance the recruitment of the complex to the COX-2 promoter, the transcription machinery is assembled, and the COX-2 gene is expressed. Such a mechanism provides deeper insights into the molecular mechanism of HBV-induced COX-2 expression.
Materials and methods
Peripheral blood samples were obtained from 107 patients with chronic hepatitis B admitted in Beijing 302 Hospital (89 males and 18 females with mean age 45.4 ± 13.8 years). Matched for sex and age, 102 healthy individuals (83 males and 19 females with mean age 42.5 ± 12.7 years) with no history of liver disease were randomly selected as controls from the local blood donation center. The collection of blood samples for research was approved by the Institutional Review Board of the College of Life Sciences, Wuhan University in accordance with guidelines for the protection of human subjects. Written informed consent was obtained from each participant.
Plasmids and reagents
A plasmid carrying 1.2-fold length of HBV genome (pHBV-1.2; subtype ayw) and the same plasmid with a stop codon for amino acid 7 of HBx (pHBV-1.2*7) were obtained from Dr. Robert Schneider . Construction of the luciferase reporter vector (pGL3) containing a COX-2 promoter region (nucleotides -891 to +9), its truncated or site-specific mutants, Flag-tagged Human C/EBPβ LAP, and C/EBPβ LIP were reported previously . The HBx gene was amplified by PCR from HepG2.2.15 cells, which contain the HBV genome. The HBx amplicon was cloned into pCMV-Tag2A using EcoRI and XhoI and into eGFP-C1 using XhoI and XbaI. HBx and C/EBPβ-LAP were cloned into the mammalian two-hybrid assay plasmids pM (GAL4 DNA-binding domain) and/or pVP16 (VP16 activation domain) (Promega) between the EcoRI and XbaI sites. DNMT1, DNMT3A, and DNMT3B siRNA plasmids were constructed by ligating the corresponding pairs of oligonucleotides to pSilencer™2.1-U6 neo (Ambion, Inc., Austin, TX, USA) based on the target sequences described previously .
EGTA, DTT, 5-aza-CdR, NS-398, and antibody against Flag were purchased from Sigma (St. Louis, MO). Antibody against COX-2 was from Cayman (Ann Arbor, MI, USA). Antibodies specific for β-actin, C/EBPβ, GFP, and DNMT1 were purchased from Santa Cruz (Santa Cruz, CA, USA). Antibodies against DNMT3A and DNMT3B were purchased from Cell Signaling Technology (Beverly, MA, USA).
The human hepatoma cell-line HepG2 was grown in Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% heat-inactivated fetal bovine serum (FBS), 100 U/mL penicillin, and 100 μg/mL streptomycin sulfate at 37°C in 5% CO2. The HepG2.2.15 cell-line was derived from HepG2 cells and stably expresses HBV (ayw), and was maintained in DMEM containing 400 μg/mL G418.
Transfection and luciferase reporter gene assays
Cells were plated at density of 4 × 105 cells per 24-well or 6-well plate, depending on the experiment, and were grown to 80% confluence prior to transfection. Cells were transfected using Lipofectamine 2000 (Invitrogen) for 24 hours, after which they were serum-starved for an additional 24 hours prior to harvest. A Renilla luciferase reporter vector pRL-TK was used as internal control. Luciferase activity was measured in each sample 48 hours after transfection using the dual-luciferase reporter assay system (Promega), and Renilla luciferase activities were determined as internal controls for transfection efficiency. Assays were performed in triplicate and expressed as mean ± SD relative to the vector or mock control samples, which were set at 100%.
Quantitative RT-PCR analysis
Quantitative RT-PCR analysis was performed to determine relative mRNA levels. Total RNA was isolated using TRIzol (Invitrogen). Cellular RNA samples were reverse-transcribed using random primers. Real-time PCR was performed in LightCycler 480 (Roche). GAPDH was amplified as an internal control. The primers used were COX-2 up: 5'-TACAATGCTGACTATGGCTAC-3' and COX-2 down: 5'-ACTGATGCGTGAAGTGCTG-3'; GAPDH up: 5'-AAGGCTGTGGGCAAGG-3' and GAPDH down: 5'-TGGAGGAGTGGGTGTCG-3'.
Western blot analysis
Whole-cell lysates were prepared by lysing cells with PBS pH 7.4 containing 0.01% Triton X-100, 0.01% EDTA, and 10% protease inhibitor cocktail (Roche). Protein concentration in each sample was determined using the Bradford assay kit (Bio-Rad). One hundred micrograms of each sample was subjected to 12% SDS-PAGE, followed by transfer to nitrocellulose membranes. Blots were blocked with nonfat dried milk prior to incubation with antibodies as indicated in the figures. Blots were developed using SuperSignal Chemiluminescent reagent (Pierce, Rockford, IL, USA) and quantified by densitometric analysis to show fold induction.
Quantification of prostaglandin E2
Cells were transfected as indicated in the figures for 24 hours, and were cultured for an additional 24 hours in DMEM without FBS or antibiotics, and either with or without NS-398 (100 μM). Conditioned media or blood samples were used to quantify PGE2 using the PGE2 EIA kit according to the manufacturer's protocol (R&D systems).
Cells were cultured in 10-cm dishes and were lysed in 800 μL lysis buffer (150 mM NaCl, 50 mM Tris/HCl (pH 7.4), 0.5% (v/v) Nonidet P-40, and protease inhibitor cocktail). Lysates were centrifuged at 14,000 ×g for 10 min, and 700 μL of each supernatant was incubated with 30 μL of protein A/G sepharose for 30 min. Antibodies (2 μg) were initially incubated with 50 μL of 50% (v/v) protein A/G-sepharose for 2 hours prior to addition to the lysate samples. Samples were incubated overnight, and the beads were extensively washed. Bound proteins were eluted from the beads and were resolved by SDS-PAGE.
Mammalian two-hybrid assays
HepG2 cells were cultivated and transfected for 24 hours with 0.5 μg of pM and pVP16, 0.5 μg of reporter pG5-Luc, and 0.01 μg of control pRL-TK (Promega). Luciferase activity in each sample was determined using the dual-luciferase reporter assay system.
Bisulfite modification and sequencing analysis
A total of 2 μg of genomic DNA was obtained from HepG2 and HepG22.214.171.124 cells, and was modified by sodium bisulfite. Primary and secondary PCR reactions were carried out in 50 μL reaction mixtures. Primers used to generate the primary PCR product were: COX-2-nest up 5'-GGAGGGATTAGATAGGAGAG-3' and COX-2-nest down 5'-AAATAAACTTTACTATCTAA-3'. To obtain products for sequencing, a secondary round of PCR was performed using the primary PCR products and the primers COX-2-up 5'-TTTAAATTGGGGTAGTTTTT-3' and COX-2-down 5'-CTACTAAAAAATTCCTAAA-3'. Secondary PCR products were gel-purified and cloned into a TA cloning vector (Promega). Individual plasmids were verified by DNA sequencing.
Electrophoretic mobility shift assays (EMSA)
Nuclear extracts were prepared from HepG2 and HepG2.2.15 cells according to methods described previously . C/EBP and NF-AT oligonucleotides were synthesized based on the human COX-2 promoter sequence:
Wild-type C/EBP: 5'-GCTTACGCAATTTTTTTAAGG-3';
Mutant C/EBP: 5'-GCGACTAGAATTTTTTTAAGG-3';
and Methyl NF-AT: 5'-ACGAAAAGGCGGAAAGAAAC-3'.
The complementary oligonucleotides were annealed and purified. Each probe was end-labeled with [γ32P]-ATP using T4 polynucleotide kinase (Takara Biotech). EMSA was performed by incubating 2 μg of nuclear extract with labeled probes (15,000 cpm; 10 fmol) in binding buffer (4 mM Tris-HCl, 12 mM HEPES-KOH, pH 7.9, 60 mM KCl, 12% glycerol, 0.5 mM EDTA, and 1 mM DTT) containing 1 μg of poly (dI-dC) for 25 min at room temperature. To ensure specific binding of transcription factors to the probes, the probes were chased by 100-fold molar excess of cold wild-type, mutant, or methylated oligonucleotides. Samples were electrophoresed on 5% nondenaturing polyacrylamide gels with running buffer (22.5 mM Tris borate and 0.5 mM EDTA), and the gels were dried and subjected to autoradiography.
Chromatin immunoprecipitation (ChIP)
HepG2 and HepG126.96.36.199 cells were incubated for 24 hours after transfection (if transfection was necessary), after which they were serum-starved for an additional 24 hours. One percent formaldehyde was added to the culture medium, and the cells were washed twice with PBS, scraped, and lysed in buffer containing 1% SDS, 10 mM Tris-HCl pH 8.0, and protease inhibitor cocktail, for 10 min on ice. The lysates were sonicated on ice and the debris was removed by centrifugation at 12,000 ×g for 15 min at 4°C. One-fourth of the supernatant was used as DNA input control. The remaining sample was diluted 10-fold with dilution buffer (0.01% SDS, 1% Triton X-100, 1 mM EDTA, 10 mM Tris-HCl pH 8.0, and 150 mM NaCl) followed by incubation with antibodies against C/EBPβ, DNMT1, DNMT3A, or DNMT3B overnight at 4°C. Immunoprecipitated complexes were collected using protein A/G-sepharose. The pellets were washed for four times with dialysis buffer containing 2 mM EDTA and 50 mM Tris-HCl pH 8.0. After washing, the precipitates were incubated in an elution buffer (1% SDS and 0.1 M NaHCO3) at room temperature. Supernatants were transferred to clean tubes, and RNase A was added to destroy bound RNA in the sample. Samples were incubated at 65°C for 5 hours to reverse formaldehyde crosslinks, and DNA was precipitated with ethanol and extracted two times with phenol/chloroform. Pellets were suspended in TE buffer and subjected to PCR amplification using the COX-2 promoter detection primers C/EBP up: -155 TAAAAAACCCTGCCCCCACCGG -134, C/EBP down: -2 TCGCTAACCGAGAGAACCTTCCTT -25, DNMTs-b up: -177 CCGATTTTCTCATTTCCGTGGG -156, and DNMTs-b down: -56 CGAAATGACTGTTTCTTTCCGCC -78.
DNMT activity assays
Nuclear extracts and total cellular proteins from HepG2 and HepG188.8.131.52 cells were prepared and protein concentrations were determined using the Bradford assay kit (Bio-Rad). Equal amounts of protein were used for DNMT activity measurement using the Epiquik DNA methyltransferase activity assay kit according to the manufacturer's protocol (Epigentek Group).
All of the experiments were reproducible and were carried out in duplicates or quadruplicates. Each set of experiments was repeated at least three times with similar results. The results are presented at the means ± S.D. Student's t-test for paired samples was used to determine statistical significance. Differences were considered statistically significant at a value of P ≤ 0.05.
hepatitis B virus
DNA methyltransferase 3B
Nuclear Factor of Activated T-Cells
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This work was supported by research grants from the Major State Basic Research Development Program of China (2007CB512803 and 2009CB522506), National Key Scientific and Technological Project (2008ZX10204), Program for New Century Excellent Talents in University of China (NCET-07-0647), National Natural Science Foundation of China (30730001), and by the Program for Changjiang Scholars and Innovative Research Team in University (IRT0745).
The authors declare that they have no competing interests.
XY designed the study, carried out all the experiments, analyzed results and drafted the manuscript. FY and WL participated in the epigenetic modifications analysis of the study. YBY analyzed the data and helped to edit the manuscript. YXM and WS contributed to acquisition of data and interpretation of the results. DPX helped to provide clinical samples and data. YZ and JGW participated in the design of the study and the critical view of manuscript writing. All authors read and approved the final manuscript.
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Yue, X., Yang, F., Yang, Y. et al. Induction of Cyclooxygenase-2 Expression by Hepatitis B Virus Depends on Demethylation-associated Recruitment of Transcription Factors to the Promoter. Virol J 8, 118 (2011). https://doi.org/10.1186/1743-422X-8-118