Diametrically opposed effects of hypoxia and oxidative stress on two viral transactivators
© Washington et al; licensee BioMed Central Ltd. 2010
Received: 24 March 2010
Accepted: 10 May 2010
Published: 10 May 2010
Many pathogens exist in multiple physiological niches within the host. Differences between aerobic and anaerobic conditions are known to alter the expression of bacterial virulence factors, typically through the conditional activity of transactivators that modulate their expression. More recently, changes in physiological niches have been shown to affect the expression of viral genes. For many viruses, differences in oxygen tension between hypoxia and normoxia alter gene expression or function. Oxygen tension also affects many mammalian transactivators including AP-1, NFkB, and p53 by affecting the reduced state of critical cysteines in these proteins. We have recently determined that an essential cys-x-x-cys motif in the EBNA1 transactivator of Epstein-Barr virus is redox-regulated, such that transactivation is favoured under reducing conditions. The crucial Tat transactivator of human immunodeficiency virus (HIV) has an essential cysteine-rich region, and is also regulated by redox. Contrary to EBNA1, it is reported that Tat's activity is increased by oxidative stress. Here we have compared the effects of hypoxia, oxidative stress, and cellular redox modulators on EBNA1 and Tat.
Our results indicate that unlike EBNA1, Tat is less active during hypoxia. Agents that generate hydroxyl and superoxide radicals reduce EBNA1's activity but increase transactivation by Tat. The cellular redox modulator, APE1/Ref-1, increases EBNA1's activity, without any effect on Tat. Conversely, thioredoxin reductase 1 (TRR1) reduces Tat's function without any effect on EBNA1.
We conclude that oxygen partial pressure and oxidative stress affects the functions of EBNA1 and Tat in a dramatically opposed fashion. Tat is more active during oxidative stress, whereas EBNA1's activity is compromised under these conditions. The two proteins respond to differing cellular redox modulators, suggesting that the oxidized cysteine adduct is a disulfide bond(s) in Tat, but sulfenic acid in EBNA1. The effect of oxygen partial pressure on transactivator function suggests that changes in redox may underlie differences in virus-infected cells dependent upon the physiological niches they traffic to.
The human body contains multiple niches that vary greatly in oxygen tension. For example, lymph nodes have oxygen partial pressure (pO2) ranging from 10-20 Torr (1-2.5% O2) [1–3]. In contrast, peripheral blood has an average level of 10-12% oxygen [ibid, ]. It is known that the activity of many mammalian transactivators is sensitive to changes in oxygen tension, leading to niche-specific gene expression patterns [5–9]. For years it has been noted that oxidative conditions alter gene expression in many pathogens [10–15]. Furthermore, oxygen tension is known to affect the activity of many viral proteins, including transactivators, thus changing the outcome of viral infection [16–18].
One such virus that displays this characteristic is the lymphotropic human herpesvirus, Epstein-Barr virus (EBV). EBV is latent in B-cells that exist in the peripheral circulation as non-dividing memory B-cells; within lymph nodes EBV-infected cells become proliferating blasts that secrete antibody [19, 20]. These two dramatically distinct cellular phenotypes result from two different viral gene expression patterns during latency [ibid]. Recent results indicate that the EBV transactivator, Epstein-Barr nuclear antigen 1 (EBNA1), is regulated by oxygen tension . Under hypoxic or reducing conditions, EBNA1 is active as a transactivator and drives viral gene expression required for cell proliferation. For EBNA1, the redox state of a pair of cysteines in a conserved cys-x-x-cys motif governs its ability to transactivate [ibid].
Similar to EBNA1, the HIV-1 Tat protein contains a redox-sensitive cysteine-rich region with multiple cys-x-x-cys motifs that is essential for Tat's ability to transactivate [21–24]. Although it was initially believed that Tat's cysteine-rich region was used to coordinate zinc [25, 26], it is now known that intramolecular disulfide bonds between the cysteine sulfhydryl groups are essential for transactivation, whereas zinc coordination is not [27–29]. Reiterating the importance of these disulfide bonds, recent reports indicate that oxidative conditions increase Tat's capacity to transactivate , whereas hypoxia reduces transactivation .
Currently, there are two known mechanisms by which oxygen tension is sensed by cysteine. High intracellular oxygen tension results in disulfide bond formation between neighbouring cysteine sulfhydryl groups. Alternatively, sulfhydryl groups can be oxidized to sulfenic acid. While both changes can be reversed under conditions of low oxygen tension, agents that reduce disulfide bonds cannot reduce sulfenic acid to sulfhydryl .
In this report, we have examined the effects of oxygen tension and oxidative stress on EBNA1 and Tat. Our results indicate that changes in redox have opposing effects on these two viral transactivators: EBNA1 is more active under reducing conditions, whereas Tat is more active under oxidative conditions. There is also a dichotomy in the cellular redox modulators that affect the function of EBNA1 and Tat. A redox modulator that reduces sulfenic acid to sulfhydryl increases EBNA1's activity, but has no effect on Tat. Conversely, modulators that reduce disulfide bonds decrease transactivation by Tat, but have no effect on EBNA1. We discuss the significance of our findings in the context of EBNA1's and Tat's roles during EBV and HIV associated pathogenesis.
AGP441, used to express a C-terminally 3xFLAG epitope EBNA1, was made by adding a 3xFLAG epitope tag to the C-terminus of EBNA1 in plasmid 1553 . The EBNA1-derivative used here contains an internal deletion in the gly-gly-ala repeat but transactivates as well as wild-type  AGP535, used to express a C-terminally 3xFLAG tagged HIV-1 Tat, was constructed by replacing the EBNA1 ORF in AGP441 with the Tat sequence from the prototypic HXB2 clone of HIV-1. In AGP441 and AGP535, epitope tagged EBNA1 and Tat are expressed from the CMV immediate early promoter. pcDNA3.1, the empty parent expression plasmid, was used for control transfections. AGP494 and AGP559 were used to express APE1/Ref-1 and thioredoxin reductase-1. Plasmid 2145, which expresses EGFP under the control of the CMV immediate early promoter, was used to correct for transfection efficiency .
The EBNA1 reporter plasmid, AGP95, has been described previously . It contains 20 EBNA1-binding sites, termed the family of repeats (FR), placed 5' to a minimal HSV-1 TK promoter (TKp)  luciferase reporter cassette. AGP546, the Tat reporter plasmid was constructed by excising FR from AGP95, and then inserting the TAR element from HIV-1 (LAV) between TKp and the luciferase gene. Similar to Tat-responsive, TAR-containing reporters described before , in AGP546 the first nucleotide transcribed is the first nucleotide of U5. Plasmid AGP47, TKp-luciferase, was used in some experiments as a control plasmid. This plasmid lacks EBNA1 binding sites, and there is no TAR element in the luciferase transcript from TKp.
Cell Culture and Transfections
The human cell epithelial cell-line, C33a, was propagated in DMEM:F12 (1:1) supplemented with 5% bovine calf serum. Cells were maintained in a 5% CO2 incubator under normoxic (20% O2), or hypoxic (4% O2) conditions. Cells were transfected as described previously. Pharmacologic agents including menadione, paraquot dichloride, sodium selenite, beta-mercaptoethanol, glutathione, and N,N,N',N'-tetrakis (2 pyridylmethyl) ethylenediamine (TPEN) were purchased from Sigma (St. Louis, MO), and added 6 hours post-transfection, and cells were harvested 18-20 hours post-addition. Control cells were treated to the vehicle for the specific pharmacologic agent being tested. Transfections were normalized using the GFP expression plasmid, 2145 by FACS profiling a fraction of each transfection to determine the fraction of live-transfected cells (GFP-positive cells that did not stain with propidium iodide). This analysis was used to correct for differences in transfection efficiency or cell survival post-transfection as described previously [18, 33, 36, 37].
Cells used in hypoxia experiments were grown in a sealed modular incubation chamber (Billups-Rothenberg, Inc, Del Mar, CA) placed at 37°C. The chamber was flushed with 4% O2 (AirGas, Theodore, AL) for five minutes prior to sealing. Chambers were re-equilibrated every 12 hours. When necessary, media changes were performed using media previously equilibrated in a 4% O2 atmosphere.
Luciferase Reporter Assays
For Tat assays, 0.3 μg of the reporter AGP546 (TKp-TAR-luciferase) was co-transfected with 10 μg of the Tat-expression plasmid AGP535, and 0.5 μg of the CMV-GFP plasmid. For EBNA1 assays, 0.3 μg of the reporter AGP95 (FR-TKp-luciferase) was co-transfected with 2 μg of the EBNA1 expression plasmid, AGP441, and the CMV-GFP plasmid as described above. Plasmid AGP47, TKp-luciferase, was used in some experiments as a control plasmid. Cells were harvested 24 hours post-transfection, and analyzed to determine the percent of live-transfected cells, prior to luciferase assays performed as described previously [18, 33, 36, 37].
Indirect Immunofluorescence Microscopy and Image Deconvolution
Cells transfected with the TAT-3xFLAG or EBNA1-3xFLAG expression plasmids were plated on Type 1 cover slips and processed for immunofluorescence as described previously [18, 36, 37]. The M2 anti-FLAG mouse monoclonal Ab (Sigma) was used as the primary antibody, and AlexaFluor 488 tagged anti-mouse Ab was used as the secondary Ab. Hoechst 33342 was used as the counter-stain to visualize nuclei. Images were obtained using an inverted Zeiss AxioVision AX10 microscope at 63X using an AxioCam MRm camera. Z-stacks containing fifteen 200 nm optical sections were deconvolved using a constrained iterative Fourier transform.
Immunoblots were performed as described previously using the M2 anti-FLAG mouse mAb (1:1000 dilution) as the primary antibody , and horseradish peroxidase conjugated rabbit anti-mouse secondary antibody. Anti-actin primary Abs, ab8226 (Abcam) or A8592 (Sigma) were used to detect beta-actin for as a loading control. Blots were visualized by chemiluminescence as described previously [36–38].
Choice of reporter cell-line, and construction of a Tat reporter plasmid
Our experiments comparing the effects of redox on EBNA1 and Tat were performed in C33a cells for the following reasons. Multiple studies indicate that EBNA1 efficiently transactivates an FR-dependent reporter in C33a cells [18, 33, 37, 39]. In addition, we have characterized metal ion requirements and some effects of oxidative stress on EBNA1's ability to transactivate in these cells . Tat is known to transactivate an HIV-LTR luciferase reporter in multiple cell-lines including epithelial lines such as 293 and the Hela derivative TZM-bl. Therefore, after confirming that Tat transactivated an HIV-LTR reporter in C33a cells (data not shown), we chose C33a cells for this study. Studying both transactivators in the same cell-line has permitted comparing them without the interpretational complications caused by using two different cell-lines.
Both reporter plasmids used the minimal TK promoter (TKp), rather than native viral promoters because viral promoters that respond to EBNA1 or Tat contain binding sites for cellular redox-responsive transcription factors [5, 7, 8, 40, 41]. Previous studies , as well as results reported here, indicate that basal transcription from TKp is not redox-sensitive. For EBNA1, we have used the reporter FR-TKp-luciferase, in which a cluster of 20 EBNA1 binding sites from the EBV genome is placed 5' to a TKp-luciferase reporter cassette [33, 39]. We constructed an analogous reporter for Tat by inserting the HIV-1 TAR RNA element between TKp and the luciferase gene. This reporter, TKp-TAR-luciferase, contains 77 nucleotides of HIV-1 sequence from the LAV strain of HIV-1 between the TKp and luciferase . The first nucleotide transcribed in TKp-TAR-luciferase is predicted to be the first nucleotide in the HIV-1 RNA genome.
The reporter plasmids used to assay transactivation by EBNA1 and Tat are schematically depicted in Figure 1D. As described earlier, both plasmids contain a TKp-luciferase reporter cassette in either an EBNA1 (AGP95) or Tat (AGP546) responsive context. EBNA1 transactivated FR-TKp-luciferase approximately 55-fold over pcDNA3, used as a control effector plasmid, and Tat transactivated TKp-TAR-luciferase approximately 9-fold over pcDNA3 (Figure 1E). Both EBNA1 and Tat can coordinate zinc. However, while EBNA1 needs zinc coordination to transactivate , Tat does not . To confirm that the metal-ion (zinc) requirements of the epitope-tagged proteins were unchanged, transfected cells were exposed to TPEN, a chelator with high specificity for Zn2+ and Fe2+. TPEN treatment began six hours post-transfection and continued for an additional 18 hours prior to analysis. Treatment with 1 μM TPEN reduced EBNA1's transactivation of FR-TKp-luciferase to 50% of control conditions (Figure 1F), but had no statistically significant effect on transactivation of TKp-TAR-luciferase by Tat, reproducing prior observations made with the native proteins [18, 28]. This experiment also confirms that TPEN does not have a non-specific effect on transcription, nor does it directly affect the basal transcription machinery active at the minimal TK promoter (Additional File 1A).
Hypoxia alters transactivation by Tat and EBNA1
Next, we tested whether agents that increase intracellular oxidative stress altered transactivation by EBNA1 and Tat in a manner opposite to the effect of hypoxia.
Differing effects of the oxidizing agents menadione and paraquot on Tat and EBNA1
EBV and HIV-1 infected cells reside in anatomical niches that differ in oxygen partial pressure (pO2). EBV-infected cells proliferate in niches with low pO2 (≤ 4% O2) [19, 43, 44], indicating high levels of viral gene expression in such niches. On the other hand, it is reported that HIV-1 RNA levels are generally lower in anoxic niches such as the brain or CSF, when compared to plasma viral load from the same patient [45, 46]. Conversely in peripheral circulation (≥ 10% O2) [43, 44], EBV-infected cells reside as quiescent memory B-cells, whereas higher levels of HIV RNA is detected in plasma [45, 46].
pO2-dependent intracellular Fenton reactions generate hydroxyl and superoxide radicals and thereby create a continuous flux of intracellular oxidative stress in response to the extracellular pO2. Normoxia (21% O2) increases the rate of radical generation over the hypoxic conditions that are present in most tissues. Cells that are explanted compensate for the increased oxidative stress by over-expressing proteins that scavenge radicals or reduce oxidized adducts [47, 48]. It is believed cell-lines that cell-lines are more resistant to pO2-induced oxidative stress than primary cells for the same reason [ibid]. Therefore, low levels of chemical oxidants can be used under normoxia to increase radical generation and thereby circumvent the difficulty in inducing oxidative stress by solely increasing pO2. Menadione and paraquot are most frequently used to increase intracellular hydroxyl and superoxide radicals [50–52], and were therefore selected as the most suitable oxidizing agents for this study.
Beta-mercaptoethanol selectively diminishes transactivation by Tat
Oxidation of sulhydryls (-SH) results in either disulfide bond formation (-S-S-) or the progressive formation of sulfenic (-SO), sulfinic (-SO2), and sulfonic acid (-SO3) . Chemical reductants such as beta-mercaptoethanol or dithiothreitol can reduce disulfide bonds, but have no effect on the other oxidized derivatives of sulhydryl. Therefore, they can be used to distinguish between the two types of adducts that can result from oxidative stress.
At 300 μM and less, beta-mercaptoethanol had no effect on cell proliferation or viability. In addition, no effect on the expression of Tat or EBNA1 was observed (Figure 4B). Attempts to confirm these results using dithiothreitol were thwarted by its toxicity on cells. In a single experiment, glutathione at a concentration of 8 μM, reduced transactivation by Tat to 40% of control, without affecting transactivation by EBNA1 (data not shown.
We further dissected these results by examining the effect of over-expressing two common cellular redox modulators, namely AP-endonuclease 1 (APE1/Ref-1) and thioredoxin reductase 1 (TRR1).
Over-expression of APE1/Ref-1 selectively augments transactivation by EBNA1
Selenium and over-expression of thioredoxin reductase 1 (TRR1) selectively reduce transactivation by Tat
Tat protein reduced in vitro is transactivation impaired when electroporated into cells . Consistent with this observation, recent reports indicate that RNA-interference mediated depletion of increases Tat's capacity to transactivate in the monocytic cell-line U937, and Tat binds TRR1 in vitro. TRR1 is a cytoplasmic seleno-enzyme that recycles thioredoxin by reducing disulfide bonds . In addition, TRR1 also directly reduces disulfide bonds in a number of substrate proteins [24, 53]. The HIV-1 LTR contains binding sites for multiple redox-sensitive transcription factors including NFkB and Sp1. The effect of TRR1 on Tat's ability to transactivate the HIV-1 LTR was performed using an LTR derivative in which the NFkB sites were deleted . However this LTR-based Tat reporter still contains intact Sp1 sites, a transcription factor that is redox regulated by thioredoxin and by TRR1 .
Because TRR1 reduces oxidized thioredoxin that acts to reduce disulfide bonds, we also tested whether over-expression of thioredoxin affected Tat's activity. In multiple experiments, thioredoxin did not affect transactivation by Tat (data not shown), thus confirming the observation that TRR1 directly interacts with Tat to affect transactivation .
Virus infection results in different outcomes for HIV-1 and EBV. Infection by HIV-1 results in the depletion of a T-cell subset, whereas EBV immortalizes naive B-cells. EBV-immortalized cells proliferate in lymph nodes, a relatively anoxic niche within the body, and EBV-positive lymphomas also proliferate at anoxic sites [19, 43, 44]. In peripheral circulation, EBV-immortalized cells are found as quiescent memory-B cells . The effect of pO2 alterations is less clear for HIV-1 pathogenesis. In general, higher levels of HIV-1 RNA are detected in peripheral circulation, while lower levels are observed in anoxic niches [45, 46].
It is likely that numerous physiological and cellular conditions result in differences observed for these viruses in differing physiological niches. On the basis of the results from this study, we speculate that redox-dependent function of two critical viral transactivators may underlie niche-dependent differing outcomes of infection.
EBNA1 transactivates the expression of a subset of EBV genes required to drive the proliferation of EBV-infected cells. Therefore, hypoxic/anoxic conditions that increase transactivation of these genes by EBNA1 may contribute to the proliferative phenotype displayed by EBV-infected cells in lymph nodes and other anoxic sites.
In the absence of Tat, HIV-1 mRNA and genomic transcripts are prematurely terminated. Our results, and those of others, indicate that oxidizing conditions increase the expression of a TAR-dependent reporter in the presence of Tat . In addition, our results indicate that hypoxia decreases the activity of Tat, similar to other recent observations . Reduction of Tat with chemical agents also decreases its transactivation capacity . Together these observations contrast with earlier observations that anoxic conditions increased HIV-1 RNA expression . This difference could potentially arise from the activation of cellular transactivators under hypoxic conditions or cellular differences. Superficially, our results also contrast with those reported recently on the effect of bacterially expressed, exogenously added Tat for HIV-1 infection of primary T-cells . In this study, under hypoxic conditions, exogenously provided Tat primed T-cells for HIV-1 infection. The reason for this difference is unknown; it may be pertinent that we have examined the activity of Tat on a TAR-dependent reporter, but the mechanism by which exogenously added Tat primes naive T-cells for infection by HIV-1 is unknown. In this context, we note that administration of the reducing agent, N-acetyl cysteine, inhibits HIV-1 expression in a chronically infected cell model [56, 57]. It is possible that this decreased expression results by reducing the capacity of Tat to transactivate.
Finally, at a molecular level, our results can be interpreted to indicate that oxidative stress modifies sulfhydryl groups on EBNA1 and Tat differently. Consistent with results reported previously , the effects of beta-mercaptoethanol and over-expression of TRR1 suggests that oxidized cysteines in Tat exist as disulfide bonds. In contrast, neither beta-mercaptoethanol nor TRR1 have any effect on EBNA1, suggesting the EBNA1 oxidation does not result in disulfides. This conclusion is supported by the observation that APE1/Ref-1, which reduces sulfenic acid to sulfhydryl, augments transactivation by EBNA1.
In summary, our studies have unexpectedly revealed dramatically different effects of oxidative stress on these two viral transactivators. This difference may reflect the physiological sites that cells infected by EBV and HIV-1 traffic to. The differential effect of oxidative stress has implications for potential therapeutic interventions that target oxidative stress in patients co-infected with both viruses.
The activity of EBNA1, a critical EBV transactivator, and Tat, a critical HIV-1 transactivator, are modulated by redox. Oxygen tension and oxidative stress have strikingly opposite effects on the capacity of these proteins to transactivate. Hypoxia increases transactivation by EBNA1, while decreasing Tat transactivation. Conversely, reactive oxygen species generated by menadione and paraquot reduce transactivation by EBNA1 but increase Tat function. The cellular redox modulators APE1/Ref-1 and TRR1 have transactivator-specific effects. APE1/Ref-1 augments EBNA1's capacity to transactivate with no effect on Tat. On the other hand, TRR1 reduces Tat's capacity to transactivate without affecting EBNA1. This data permits us to propose that the redox-dependent functions of EBNA1 and Tat may underlie the behavior of EBV and HIV infected cells within physiological niches that differ in oxygen tension.
AGP441 was made by Siddhesh Aras, and AGP95 & AGP47 by Christy Hebner. We thank Tim Foster for experimental suggestions, and Jeff Hobden for critiquing the manuscript. AA and GS were supported in part by funds from the Stanley S. Scott Cancer Center at LSUHSC. ATW is a graduate student in the Department of Microbiology, Immunology, and Parasitology at LSUHSC. An award from the National Cancer Institute (R01CA112564) to AA supported this work. The funding agency played no role in designing the study, data collection, analysis or interpretation, manuscript preparation, on in deciding to submit the manuscript for publication.
- Star-Lack JM, Adalsteinsson E, Adam MF, Terris DJ, Pinto HA, Brown JM, Spielman DM: In vivo 1H MR spectroscopy of human head and neck lymph node metastasis and comparison with oxygen tension measurements. AJNR Am J Neuroradiol 2000, 21: 183-193.PubMedGoogle Scholar
- Krieger JA, Landsiedel JC, Lawrence DA: Differential in vitro effects of physiological and atmospheric oxygen tension on normal human peripheral blood mononuclear cell proliferation, cytokine and immunoglobulin production. Int J Immunopharmacol 1996, 18: 545-552. 10.1016/S0192-0561(96)00057-4PubMedView ArticleGoogle Scholar
- Dardzinski BJ, Sotak CH: Rapid tissue oxygen tension mapping using 19F inversion-recovery echo-planar imaging of perfluoro-15-crown-5-ether. Magn Reson Med 1994, 32: 88-97. 10.1002/mrm.1910320112PubMedView ArticleGoogle Scholar
- Sahaf B, Atkuri K, Heydari K, Malipatlolla M, Rappaport J, Regulier E, Herzenberg LA: Culturing of human peripheral blood cells reveals unsuspected lymphocyte responses relevant to HIV disease. Proc Natl Acad Sci USA 2008, 105: 5111-5116. 10.1073/pnas.0712363105PubMedPubMed CentralView ArticleGoogle Scholar
- Xanthoudakis S, Miao G, Wang F, Pan YC, Curran T: Redox activation of Fos-Jun DNA binding activity is mediated by a DNA repair enzyme. EMBO J 1992, 11: 3323-3335.PubMedPubMed CentralGoogle Scholar
- Huang RP, Adamson ED: Characterization of the DNA-binding properties of the early growth response-1 (Egr-1) transcription factor: evidence for modulation by a redox mechanism. DNA Cell Biol 1993, 12: 265-273. 10.1089/dna.1993.12.265PubMedView ArticleGoogle Scholar
- Mitomo K, Nakayama K, Fujimoto K, Sun X, Seki S, Yamamoto K: Two different cellular redox systems regulate the DNA-binding activity of the p50 subunit of NF-kappa B in vitro. Gene 1994, 145: 197-203. 10.1016/0378-1119(94)90005-1PubMedView ArticleGoogle Scholar
- Xanthoudakis S, Curran T: Redox regulation of AP-1: a link between transcription factor signaling and DNA repair. Adv Exp Med Biol 1996, 387: 69-75.PubMedView ArticleGoogle Scholar
- Jayaraman L, Murthy KG, Zhu C, Curran T, Xanthoudakis S, Prives C: Identification of redox/repair protein Ref-1 as a potent activator of p53. Genes Dev 1997, 11: 558-570. 10.1101/gad.11.5.558PubMedView ArticleGoogle Scholar
- Dumas C, Ouellette M, Tovar J, Cunningham ML, Fairlamb AH, Tamar S, Olivier M, Papadopoulou B: Disruption of the trypanothione reductase gene of Leishmania decreases its ability to survive oxidative stress in macrophages. EMBO J 1997, 16: 2590-2598. 10.1093/emboj/16.10.2590PubMedPubMed CentralView ArticleGoogle Scholar
- Golenda CF, Li J, Rosenberg R: Continuous in vitro propagation of the malaria parasite Plasmodium vivax. Proc Natl Acad Sci USA 1997, 94: 6786-6791. 10.1073/pnas.94.13.6786PubMedPubMed CentralView ArticleGoogle Scholar
- Partridge JD, Scott C, Tang Y, Poole RK, Green J: Escherichia coli transcriptome dynamics during the transition from anaerobic to aerobic conditions. J Biol Chem 2006, 281: 27806-27815. 10.1074/jbc.M603450200PubMedView ArticleGoogle Scholar
- Schwarz KB: Oxidative stress during viral infection: a review. Free Radic Biol Med 1996, 21: 641-649. 10.1016/0891-5849(96)00131-1PubMedView ArticleGoogle Scholar
- Rosl F, Das BC, Lengert M, Geletneky K, zur Hausen H: Antioxidant-induced changes of the AP-1 transcription complex are paralleled by a selective suppression of human papillomavirus transcription. J Virol 1997, 71: 362-370.PubMedPubMed CentralGoogle Scholar
- Chlichlia K, Los M, Schulze-Osthoff K, Gazzolo L, Schirrmacher V, Khazaie K: Redox events in HTLV-1 Tax-induced apoptotic T-cell death. Antioxid Redox Signal 2002, 4: 471-477. 10.1089/15230860260196263PubMedView ArticleGoogle Scholar
- McBride AA, Klausner RD, Howley PM: Conserved cysteine residue in the DNA-binding domain of the bovine papillomavirus type 1 E2 protein confers redox regulation of the DNA-binding activity in vitro. Proc Natl Acad Sci USA 1992, 89: 7531-7535. 10.1073/pnas.89.16.7531PubMedPubMed CentralView ArticleGoogle Scholar
- Day L, Chau CM, Nebozhyn M, Rennekamp AJ, Showe M, Lieberman PM: Chromatin profiling of Epstein-Barr virus latency control region. J Virol 2007, 81: 6389-6401. 10.1128/JVI.02172-06PubMedPubMed CentralView ArticleGoogle Scholar
- Aras S, Singh G, Johnston K, Foster T, Aiyar A: Zinc coordination is required for and regulates transcription activation by Epstein-Barr nuclear antigen 1. PLoS Pathog 2009, 5: e1000469. 10.1371/journal.ppat.1000469PubMedPubMed CentralView ArticleGoogle Scholar
- Kieff E, RIckinson AB: Epstein-Barr Virus and Its Replication. In Fields Virology Edited by: Knipe D, Howley PM. 2001, 2: 2511-2573.Google Scholar
- Hochberg D, Middeldorp JM, Catalina M, Sullivan JL, Luzuriaga K, Thorley-Lawson DA: Demonstration of the Burkitt's lymphoma Epstein-Barr virus phenotype in dividing latently infected memory cells in vivo. Proc Natl Acad Sci USA 2004, 101: 239-244. 10.1073/pnas.2237267100PubMedPubMed CentralView ArticleGoogle Scholar
- Sodroski J, Patarca R, Rosen C, Wong-Staal F, Haseltine W: Location of the trans-activating region on the genome of human T-cell lymphotropic virus type III. Science 1985, 229: 74-77. 10.1126/science.2990041PubMedView ArticleGoogle Scholar
- Dayton AI, Sodroski JG, Rosen CA, Goh WC, Haseltine WA: The trans-activator gene of the human T cell lymphotropic virus type III is required for replication. Cell 1986, 44: 941-947. 10.1016/0092-8674(86)90017-6PubMedView ArticleGoogle Scholar
- Kuppuswamy M, Subramanian T, Srinivasan A, Chinnadurai G: Multiple functional domains of Tat, the trans-activator of HIV-1, defined by mutational analysis. Nucleic Acids Res 1989, 17: 3551-3561. 10.1093/nar/17.9.3551PubMedPubMed CentralView ArticleGoogle Scholar
- Kalantari P, Narayan V, Natarajan SK, Muralidhar K, Gandhi UH, Vunta H, Henderson AJ, Prabhu KS: Thioredoxin reductase-1 negatively regulates HIV-1 transactivating protein Tat-dependent transcription in human macrophages. J Biol Chem 2008, 283: 33183-33190. 10.1074/jbc.M807403200PubMedPubMed CentralView ArticleGoogle Scholar
- Frankel AD, Chen L, Cotter RJ, Pabo CO: Dimerization of the tat protein from human immunodeficiency virus: a cysteine-rich peptide mimics the normal metal-linked dimer interface. Proc Natl Acad Sci USA 1988, 85: 6297-6300. 10.1073/pnas.85.17.6297PubMedPubMed CentralView ArticleGoogle Scholar
- Frankel AD, Bredt DS, Pabo CO: Tat protein from human immunodeficiency virus forms a metal-linked dimer. Science 1988, 240: 70-73. 10.1126/science.2832944PubMedView ArticleGoogle Scholar
- Sadaie MR, Mukhopadhyaya R, Benaissa ZN, Pavlakis GN, Wong-Staal F: Conservative mutations in the putative metal-binding region of human immunodeficiency virus tat disrupt virus replication. AIDS Res Hum Retroviruses 1990, 6: 1257-1263.PubMedGoogle Scholar
- Koken SE, Greijer AE, Verhoef K, van Wamel J, Bukrinskaya AG, Berkhout B: Intracellular analysis of in vitro modified HIV Tat protein. J Biol Chem 1994, 269: 8366-8375.PubMedGoogle Scholar
- Tosi G, Meazza R, De Lerma Barbaro A, D'Agostino A, Mazza S, Corradin G, Albini A, Noonan DM, Ferrini S, Accolla RS: Highly stable oligomerization forms of HIV-1 Tat detected by monoclonal antibodies and requirement of monomeric forms for the transactivating function on the HIV-1 LTR. Eur J Immunol 2000, 30: 1120-1126. 10.1002/(SICI)1521-4141(200004)30:4<1120::AID-IMMU1120>3.0.CO;2-4PubMedView ArticleGoogle Scholar
- Charles S, Ammosova T, Cardenas J, Foster A, Rotimi J, Jerebtsova M, Ayodeji AA, Niu X, Ray PE, Gordeuk VR, Kashanchi F, Nekhai S: Regulation of HIV-1 transcription at 3% versus 21% oxygen concentration. J Cell Physiol 2009, 221: 469-479. 10.1002/jcp.21882PubMedPubMed CentralView ArticleGoogle Scholar
- Bhakat KK, Mantha AK, Mitra S: Transcriptional regulatory functions of mammalian AP-endonuclease (APE1/Ref-1), an essential multifunctional protein. Antioxid Redox Signal 2009, 11: 621-638. 10.1089/ars.2008.2198PubMedPubMed CentralView ArticleGoogle Scholar
- Aiyar A, Sugden B: Fusions between Epstein-Barr viral nuclear antigen-1 of Epstein-Barr virus and the large T-antigen of simian virus 40 replicate their cognate origins. J Biol Chem 1998, 273: 33073-33081. 10.1074/jbc.273.49.33073PubMedView ArticleGoogle Scholar
- Hebner C, Lasanen J, Battle S, Aiyar A: The spacing between adjacent binding sites in the family of repeats affects the functions of Epstein-Barr nuclear antigen 1 in transcription activation and stable plasmid maintenance. Virology 2003, 311: 263-274. 10.1016/S0042-6822(03)00122-3PubMedPubMed CentralView ArticleGoogle Scholar
- McKnight SL, Gavis ER, Kingsbury R, Axel R: Analysis of transcriptional regulatory signals of the HSV thymidine kinase gene: identification of an upstream control region. Cell 1981, 25: 385-398. 10.1016/0092-8674(81)90057-XPubMedView ArticleGoogle Scholar
- Berkhout B, Gatignol A, Silver J, Jeang KT: Efficient trans-activation by the HIV-2 Tat protein requires a duplicated TAR RNA structure. Nucleic Acids Res 1990, 18: 1839-1846. 10.1093/nar/18.7.1839PubMedPubMed CentralView ArticleGoogle Scholar
- Sears J, Kolman J, Wahl GM, Aiyar A: Metaphase chromosome tethering is necessary for the DNA synthesis and maintenance of oriP plasmids but is insufficient for transcription activation by Epstein-Barr nuclear antigen 1. J Virol 2003, 77: 11767-11780. 10.1128/JVI.77.21.11767-11780.2003PubMedPubMed CentralView ArticleGoogle Scholar
- Singh G, Aras S, Zea AH, Koochekpour S, Aiyar A: Optimal transactivation by Epstein-Barr nuclear antigen 1 requires the UR1 and ATH1 domains. J Virol 2009, 83: 4227-4235. 10.1128/JVI.02578-08PubMedPubMed CentralView ArticleGoogle Scholar
- Sears J, Ujihara M, Wong S, Ott C, Middeldorp J, Aiyar A: The amino terminus of Epstein-Barr Virus (EBV) nuclear antigen 1 contains AT hooks that facilitate the replication and partitioning of latent EBV genomes by tethering them to cellular chromosomes. J Virol 2004, 78: 11487-11505. 10.1128/JVI.78.21.11487-11505.2004PubMedPubMed CentralView ArticleGoogle Scholar
- Mackey D, Sugden B: The linking regions of EBNA1 are essential for its support of replication and transcription. Mol Cell Biol 1999, 19: 3349-3359.PubMedPubMed CentralView ArticleGoogle Scholar
- Xanthoudakis S, Curran T: Analysis of c-Fos and c-Jun redox-dependent DNA binding activity. Methods Enzymol 1994, 234: 163-174. full_textPubMedView ArticleGoogle Scholar
- Hutchison KA, Matic G, Meshinchi S, Bresnick EH, Pratt WB: Redox manipulation of DNA binding activity and BuGR epitope reactivity of the glucocorticoid receptor. J Biol Chem 1991, 266: 10505-10509.PubMedGoogle Scholar
- Liu Q, Berchner-Pfannschmidt U, Moller U, Brecht M, Wotzlaw C, Acker H, Jungermann K, Kietzmann T: A Fenton reaction at the endoplasmic reticulum is involved in the redox control of hypoxia-inducible gene expression. Proc Natl Acad Sci USA 2004, 101: 4302-4307. 10.1073/pnas.0400265101PubMedPubMed CentralView ArticleGoogle Scholar
- Duca KA, Shapiro M, Delgado-Eckert E, Hadinoto V, Jarrah AS, Laubenbacher R, Lee K, Luzuriaga K, Polys NF, Thorley-Lawson DA: A virtual look at Epstein-Barr virus infection: biological interpretations. PLoS Pathog 2007, 3: 1388-1400. 10.1371/journal.ppat.0030137PubMedView ArticleGoogle Scholar
- Babcock GJ, Decker LL, Freeman RB, Thorley-Lawson DA: Epstein-barr virus-infected resting memory B cells, not proliferating lymphoblasts, accumulate in the peripheral blood of immunosuppressed patients. J Exp Med 1999, 190: 567-576. 10.1084/jem.190.4.567PubMedPubMed CentralView ArticleGoogle Scholar
- Robertson K, Fiscus S, Kapoor C, Robertson W, Schneider G, Shepard R, Howe L, Silva S, Hall C: CSF, plasma viral load and HIV associated dementia. J Neurovirol 1998, 4: 90-94. 10.3109/13550289809113485PubMedView ArticleGoogle Scholar
- Kamat A, Ravi V, Desai A, Satishchandra P, Satish KS, Borodowsky I, Subbakrishna DK, Kumar M: Quantitation of HIV-1 RNA levels in plasma and CSF of asymptomatic HIV-1 infected patients from South India using a TaqMan real time PCR assay. J Clin Virol 2007, 39: 9-15. 10.1016/j.jcv.2006.12.026PubMedView ArticleGoogle Scholar
- Das KC, Guo XL, White CW: Hyperoxia induces thioredoxin and thioredoxin reductase gene expression in lungs of premature baboons with respiratory distress and bronchopulmonary dysplasia. Chest 1999, 116: 101S. 10.1378/chest.116.suppl_1.101SPubMedView ArticleGoogle Scholar
- Das KC, Guo XL, White CW: Induction of thioredoxin and thioredoxin reductase gene expression in lungs of newborn primates by oxygen. Am J Physiol 1999, 276: L530-539.PubMedGoogle Scholar
- Kietzmann T, Fandrey J, Acker H: Oxygen Radicals as Messengers in Oxygen-Dependent Gene Expression. News Physiol Sci 2000, 15: 202-208.PubMedGoogle Scholar
- Grune T, Reinheckel T, Joshi M, Davies KJ: Proteolysis in cultured liver epithelial cells during oxidative stress. Role of the multicatalytic proteinase complex, proteasome. J Biol Chem 1995, 270: 2344-2351. 10.1074/jbc.270.5.2344PubMedView ArticleGoogle Scholar
- Nunes VA, Gozzo AJ, Cruz-Silva I, Juliano MA, Viel TA, Godinho RO, Meirelles FV, Sampaio MU, Sampaio CA, Araujo MS: Vitamin E prevents cell death induced by mild oxidative stress in chicken skeletal muscle cells. Comp Biochem Physiol C Toxicol Pharmacol 2005, 141: 225-240. 10.1016/j.cca.2005.06.001PubMedView ArticleGoogle Scholar
- Bradley JL, Homayoun S, Hart PE, Schapira AH, Cooper JM: Role of oxidative damage in Friedreich's ataxia. Neurochem Res 2004, 29: 561-567. 10.1023/B:NERE.0000014826.00881.c3PubMedView ArticleGoogle Scholar
- Lothrop AP, Ruggles EL, Hondal RJ: No selenium required: reactions catalyzed by mammalian thioredoxin reductase that are independent of a selenocysteine residue. Biochemistry 2009, 48: 6213-6223. 10.1021/bi802146wPubMedPubMed CentralView ArticleGoogle Scholar
- Bloomfield KL, Osborne SA, Kennedy DD, Clarke FK, Tonissen KF: Thioredoxin-mediated redox control of the transcription factor Sp1 and regulation of the thioredoxin gene promoter. Gene 2003, 319: 107-116. 10.1016/S0378-1119(03)00799-6PubMedView ArticleGoogle Scholar
- Polonis VR, Anderson GR, Vahey MT, Morrow PJ, Stoler D, Redfield RR: Anoxia induces human immunodeficiency virus expression in infected T cell lines. J Biol Chem 1991, 266: 11421-11424.PubMedGoogle Scholar
- Roederer M, Raju PA, Staal FJ, Herzenberg LA: N-acetylcysteine inhibits latent HIV expression in chronically infected cells. AIDS Res Hum Retroviruses 1991, 7: 563-567. 10.1089/aid.1991.7.563PubMedView ArticleGoogle Scholar
- Staal FJ, Roederer M, Raju PA, Anderson MT, Ela SW, Herzenberg LA: Antioxidants inhibit stimulation of HIV transcription. AIDS Res Hum Retroviruses 1993, 9: 299-306. 10.1089/aid.1993.9.299PubMedView ArticleGoogle Scholar
This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.