Table 3 Secondary structure prediction of proteins encoded by the six unique CP sequences
From: Functional analysis of apple stem pitting virus coat protein variants
Name | # Total Amino acids (AA) | Alpha helix #AA | Extended strand #AA | Beta turn #AA | Random coil #AA |
|---|---|---|---|---|---|
HB-HN1–3 | 394 | 99 (25.13%)a | 61 (15.48%) | 23 (5.84%) | 211 (53.55%) |
HN-HN7–18 | 394 | 111 (28.17%) | 50 (12.69%) | 11 (2.79%) | 222 (56.35%) |
HB-HN6–8 | 410 | 129 (31.46%) | 52 (12.68%) | 20 (4.88%) | 209 (50.98%) |
HB-HN9–3 | 410 | 127 (30.98%) | 37 (9.02%) | 17 (4.15%) | 229 (55.85%) |
YN-MRS-17 | 374 | 134 (35.83%) | 42 (11.23%) | 22 (5.88%) | 176 (47.06%) |
LN-AP1–1 | 396 | 117 (29.55%) | 60 (15.15%) | 20 (5.05%) | 199 (50.25%) |