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Table 3 Secondary structure prediction of proteins encoded by the six unique CP sequences

From: Functional analysis of apple stem pitting virus coat protein variants

Name # Total Amino acids (AA) Alpha helix #AA Extended strand #AA Beta turn #AA Random coil #AA
HB-HN1–3 394 99 (25.13%)a 61 (15.48%) 23 (5.84%) 211 (53.55%)
HN-HN7–18 394 111 (28.17%) 50 (12.69%) 11 (2.79%) 222 (56.35%)
HB-HN6–8 410 129 (31.46%) 52 (12.68%) 20 (4.88%) 209 (50.98%)
HB-HN9–3 410 127 (30.98%) 37 (9.02%) 17 (4.15%) 229 (55.85%)
YN-MRS-17 374 134 (35.83%) 42 (11.23%) 22 (5.88%) 176 (47.06%)
LN-AP1–1 396 117 (29.55%) 60 (15.15%) 20 (5.05%) 199 (50.25%)
  1. aindicated that 99 amino acids in this protein were predicted to form Alpha helix structure, which is 25.13% of the total amino acids number