Table 3 Computationally predicted differentially expressed genes
Contig ID | Gen ID | Non-redundant polypeptide (NCBI) | Biological process (GO) | Symptomatic vs. Mock | Recovered vs. Mock | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Mapped reads | Predicted fold change | qRT- PCR fold change | Mapped reads | Predicted fold change | qRT- PCR fold change | ||
| Â | Â | Â | Â | S | M | Â | Â | R | M | Â | Â |
Pepper05849(839 bp) | Pepper-RRP1 | Putative kiwellin ripening-related protein precursor [S. tuberosum] | Gene Ontology annotation was not found | 225 | 1 | 69.5 | 138.6 | 217 | 1 | 66.9 | 38.4 |
Pepper00302(756 bp) | Pepper-PR5 | PR5-like protein [C. annuum] | Response to salt stress and bacterium. | 81 | 1 | 25 | 6.4 | 79 | 1 | 24.3 | 2.6 |
Pepper25924(1224 bp) | Pepper-ANN | PREDICTED: annexin D4 [Vitis vinifera] | Response to abscisic acid stimulus and osmotic stress | 192 | 8 | 7.4 | 6.3 | 207 | 8 | 7.9 | 2.4 |
Pepper27731(1768 bp) | Pepper-CPD | Carboxypeptidase type III [Theobroma cacao] | Gene Ontology annotation was not found | 150 | 7 | 6.6 | 6.7 | 143 | 7 | 6.3 | 2.7 |
Pepper28222(845 bp) | Pepper-GST1 | Glutathione S-transferase (GST1) [C. chinense] | Defense response to bacterium, salt stress, defense, cold, toxin catabolic process | 187 | 12 | 4.8 | 4.4 | 204 | 12 | 5.2 | 2.2 |
Pepper26071(1240 bp) | Pepper-OPR1 | 12-oxophytodienoate reductase 1 (OPDA-reductase 1) (LeOPR1) | Jasmonic acid biosynthetic process | 170 | 19 | 2.7 | 3.4 | 155 | 19 | 2.5 | 2.1 |
Pepper31770(1251 bp) | Pepper-HSP70 | Heat shock 70 kDa protein | Response to cadmium ion, protein folding, bacterium, heat, high light intensity, hydrogen peroxide and virus. | 303 | 36 | 2.6 | 2.9 | 323 | 36 | 2.7 | 1.3 |