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Table 1 Sequence comparisons of clinical isolates NH1067, NH1125

From: Induction of IL-6 and CCL5 (RANTES) in human respiratory epithelial (A549) cells by clinical isolates of respiratory syncytial virus is strain specific

Genomic segmenta Length in basesb Nucleotide differences Non-sensec Mis-sensec Silentc
3’end-NS1 98 1    
NS1 gene 420 1    1
NS1-NS2 107 0    
NS2 gene 375 4   1 3
NS2-N 136 (137) 6    
N gene 1176 16   1 15
N-P 32 0    
P gene 726 5   1 4
P-M 186 (188) 11    
M gene 771 10    10
M-SH 268 10    
SH gene 198 4    4
SH-G 189 4    
G gene 888 (951) 23   13 10
G-F 88 0    
F gene 1725 20   4 16
F-M2-1 225 (226) 8    
M2-1 gene 588 4   2 2
M2-1-M2-2d 35 0    
M2-2 gene 273 4    4
M2-2-L 65 2    
L gene 6501 59   8 51
L-5’end 216 2    
Total 15216 (15283) 194 0 30 120
  1. aGene coding sequences (“gene”) or intergenic (inter-ORF) segment listed unless otherwise noted (3’ and 5’ end).
  2. bNH1067 length in () when it differs from NH1125. NH1067 G gene contains a 3 base and 60 base insertion.
  3. cNon-sense, mis-sense and silent nucleotide differences between the 2 strains are listed for coding sequences only.
  4. dM2-1 and M2-2 overlap by 35 nucleotides.