Table 1 Identities between isolate PVYNTN-HN1 and other isolates of Potato virus Y (PVY) at both nucleic acid and protein levels
| Â | Length | Sequence Identity (%) (Nucleic acid, Protein) | ||||||
|---|---|---|---|---|---|---|---|---|
| Â | Gene nucleotide, size (bp) | Protein size (aa) | PVYO-RB (HM367076) | PVYN-605 (X97895) | PVYN-Jg (AY166867) | PVYNTN-Hun (M95491) | PVYN:O-Mb112 (AY745491) | PVYNTN-HN2 (GQ200836) |
5' UTR | 1-188, 188 | - | 66.0, - | 100, - | 85.6, - | 100, - | 100, - | 99.5, - |
P1 | 189-1013, 825 | 275 | 73.0, 71.3 | 99.3, 99.6 | 92.2, 91.3 | 98.7, 98.2 | 99.6, 100 | 98.9, 100 |
HC-Pro | 1014-2408, 1395 | 465 | 82.2, 90.5 | 98.8, 99.4 | 92.6, 96.8 | 99.1, 99.1 | 98.4, 99.4 | 98.4, 98.9 |
P3 | 2409-3503, 1095 | 365 | 97.3, 98.6 | 84.7, 92.6 | 84.6, 92.3 | 99.4, 99.7 | 99.1, 99.7 | 96.3, 97.8 |
6K1 | 3504-3659, 156 | 52 | 97.4, 100 | 81.4, 84.6 | 82.1, 86.5 | 99.4, 100 | 100, 100 | 98.1, 98.1 |
CI | 3660-5561, 1902 | 634 | 97.3, 99.1 | 84.1, 95.7 | 84.1, 95.7 | 99.6, 99.5 | 99.3, 99.5 | 98.7, 99.7 |
6K2 | 5562-5717, 156 | 52 | 95.5, 100 | 82.1, 90.4 | 79.5, 90.4 | 100, 100 | 100, 100 | 99.4, 98.1 |
VPG | 5718-6281, 564 | 188 | 86.9, 92.0 | 97.0, 99.5 | 95.6, 97.3 | 98.9, 99.5 | 87.8, 94.7 | 97.9, 99.5 |
NIa | 6282-7013, 732 | 244 | 80.9, 93.6 | 99.3, 98.2 | 97.0, 98.8 | 99.2, 98.8 | 80.6, 92.2 | 99.0, 99.2 |
NIb | 7014-8570, 1557 | 519 | 83.5, 93.6 | 98.8, 99.0 | 97.6, 98.7 | 98.7, 98.7 | 84.9, 94.4 | 98.2, 99.0 |
CP | 8571-9371, 801 | 267 | 90.8, 92.9 | 97.5, 98.9 | 96.5, 98.9 | 99.4, 98.9 | 91.4, 94.4 | 91.6, 94.0 |
3' UTR | 9372-9702, 331 | - | 98.2, - | 84.0, - | 85.8, - | 99.1, - | 98.8, - | 99.1, - |
Full length | 1-9702, 9702 | 3061 | 87.9, 92.8 | 93.2, 97.3 | 90.9, 95.9 | 99.2, 99.1 | 94.1, 97.4 | 97.7, 98.7 |