Table 1 Percent (%) nucleotide (nt) and amino acid (aa) identities between non-translated regions, protein-coding genes and complete genome of SG strain Grapevine leafroll-associated virus 2 (GLRaV-2-SG; KF220376) and other strains of GLRaV-2 (OR1, 93/955, BD and RG; GenBank: FJ436234; NC007448; DQ286725; NC004724)
GLRaV-2-SG | Length (bp) | % Identity | |||||||
|---|---|---|---|---|---|---|---|---|---|
OR1 | 93/955 | BD | RG | ||||||
nt | aa | nt | aa | nt | aa | nt | aa | ||
5′ NTR | 106 | 94 | -- | 96 | -- | 86 | -- | 83 | -- |
ORF1a | 8808 | 84 | 86 | 84 | 87 | 69 | 71 | 70 | 72 |
ORF1b | 1263 | 88 | 96 | 89 | 98 | 79 | 94 | 79 | 94 |
p6 | 171 | 87 | 95 | 87 | 91 | 75 | 77 | 78 | 78 |
HSP70h | 1662 | 86 | 91 | 86 | 90 | 76 | 86 | 76 | 84 |
p63 | 1656 | 86 | 90 | 88 | 92 | 75 | 80 | 74 | 80 |
CPm | 672 | 86 | 94 | 87 | 96 | 78 | 90 | 77 | 87 |
CP | 597 | 87 | 92 | 88 | 92 | 75 | 84 | 76 | 87 |
p19 | 483 | 90 | 83 | 90 | 84 | 76 | 71 | 75 | 71 |
p24 | 618 | 87 | 93 | 88 | 92 | 77 | 81 | 78 | 81 |
3′ NTR | 205 | 88 | -- | 85 | -- | 83 | -- | 83 | -- |
Complete genome | 16474 | 85 | -- | 85 | -- | 72 | -- | 72 | -- |