Table 5 Fleeting mutations
Position | Mutation | Lineage characteristic of | Sample 1 (%) | Sample 2 (%) | Sample 3 (%) | Sample 4 (%) | Sample 5 (%) | Sample 6 (%) | Sample 7 (%) | Sample 8 (%) | Sample 9 (%) | Annotation | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8,477 | T → A | Neither |  |  |  | 52.60 | 24.00 |  |  |  |  | L2738I (TTA → ATA) | orf1ab →  |
11,276 | Δ20 bp | Neither |  |  |  | 78.50 |  |  |  |  |  | coding (11,011–11030/13203 nt) | orf1ab →  |
11,283 | Δ20 bp | Neither |  |  |  | 50.30 |  |  |  |  |  | coding (11,018–11037/13203 nt) | orf1ab →  |
11,283 | Δ15 bp | Neither |  |  |  |  |  |  |  | 94.50 |  | coding (11,018–11032/13203 nt) | orf1ab →  |
11,287 | Δ9 bp | Neither |  |  |  | 100 | 100 |  |  |  | 100 | coding (11,022–11030/13203 nt) | orf1ab →  |
16,474 | A → G | Neither |  | 23.80 | 55.90 | 12.20 | 21.70 |  |  |  | 27.60 | S5404G (AGT → GGT) | orf1ab →  |
23,013 | A → C | BA.1 | 100 | 84.20 | 88.40 | 77.10 | 89.70 |  |  |  | 94.00 | E484A (GAA → GCA) | S →  |
23,042 | T → C | Neither | 14.40 | 9.80 | 18.90 | 8.80 | 100 |  | 100 | 5.30 |  | S494P (TCA → CCA) | S →  |
25,792 | C → T | Neither |  | 64.80 | 84.10 | 23.60 | 8.00 | 59.50 |  |  | 18.90 | R134C (CGT → TGT) | ORF3a →  |
27,509 | C → T | Neither |  | 26.60 | 50.40 | 18.60 |  |  |  |  | 37.40 | T39I (ACA → ATA) | ORF7a →  |
29,085 | C → T | Neither |  | 10.90 |  | 20.60 | 11.90 | 85.70 |  | 100 | 5.20 | T271I (ACA → ATA) | N →  |