Table 4 Mutations gained in sample 9
Position | Mutation | Lineage characteristic of | Sample9 (%) | Annotation | Gene |
|---|---|---|---|---|---|
2,832 | A → G | BA.1 | 58.50 | K856R (AAG → AGG) | orf1ab →  |
6,513 | Δ3 bp | Neither | 66.00 | coding (6248–6250/13203 nt) | orf1ab →  |
8,393 | G → A | BA.1 | 78.60 | A2710T (GCT → ACT) | orf1ab →  |
10,029 | C → T | BA.1 | 57.90 | T3255I (ACC → ATC) | orf1ab →  |
10,449 | C → A | BA.1 | 63.50 | P3395H (CCC → CAC) | orf1ab →  |
11,537 | A → G | BA.1 | 54.50 | I3758V (ATT → GTT) | orf1ab →  |
18,163 | A → G | BA.1 | 51.60 | I5967V (ATA → GTA) | orf1ab →  |
21,762 | C → T | BA.1 | 58.20 | A67V (GCT → GTT) | S →  |
21,766 | Δ6 bp | BA.1 | 75.50 | coding (204–209/3822 nt) | S →  |
21,846 | C → T | BA.1 | 59.90 | T95I (ACT → ATT) | S →  |
21,987 | Δ9 bp | BA.1 | 65.60 | coding (425–433/3822 nt) | S →  |
22,194 | 11 bp → 17 bp | BA.1 | 58.60 | coding (632–642/3822 nt) | S →  |
22,578 | G → A | BA.1 | 64.50 | G339D (GGT → GAT) | S →  |
22,599 | G → A | Neither | 62.20 | R346K (AGA → AAA) | S →  |
22,673 | T → C | BA.1 | 58.00 | S371P (TCC → CCC) ‡ | S →  |
22,674 | C → T | Neither, but S371L is hallmark of BA.1 | 62.20 | S371F (TCC → TTC) ‡ | S →  |
22,679 | T → C | BA.1 | 62.20 | S373P (TCA → CCA) | S →  |
22,686 | C → T | BA.1 | 61.00 | S375F (TCC → TTC) | S →  |
22,992 | G → A | BA.1 | 88.90 | S477N (AGC → AAC) | S →  |
22,995 | C → A | BA.1 | 49.10 | T478K (ACA → AAA) | S →  |
23,040 | A → G | BA.1 | 53.10 | Q493R (CAA → CGA) | S →  |
23,048 | G → A | BA.1 | 48.10 | G496S (GGT → AGT) | S →  |
23,055 | A → G | BA.1 | 51.30 | Q498R (CAA → CGA) | S →  |
23,063 | A → T | BA.1 | 50.70 | N501Y (AAT → TAT) | S →  |
23,075 | T → C | BA.1 | 51.90 | Y505H (TAC → CAC) | S →  |
23,202 | C → A | BA.1 | 56.30 | T547K (ACA → AAA) | S →  |
23,525 | C → T | BA.1 | 100 | H655Y (CAT → TAT) | S →  |
23,599 | T → G | BA.1 | 49.30 | N679K (AAT → AAG) | S →  |
23,604 | C → A | BA.1 | 64.20 | P681H (CCT → CAT) | S →  |
23,854 | C → A | BA.1 | 46.20 | N764K (AAC → AAA) | S →  |
23,948 | G → T | BA.1 | 44.30 | D796Y (GAT → TAT) | S →  |
24,130 | C → A | BA.1 | 83.70 | N856K (AAC → AAA) | S →  |
24,424 | A → T | BA.1 | 61.70 | Q954H (CAA → CAT) | S →  |
24,469 | T → A | BA.1 | 62.20 | N969K (AAT → AAA) | S →  |
24,503 | C → T | BA.1 | 62.40 | L981F (CTT → TTT) | S →  |
26,270 | C → T | BA.1 | 62.80 | T9I (ACA → ATA) | E →  |
26,530 | A → G | BA.1 | 82.30 | D3G (GAT → GGT) | M →  |
26,577 | C → G | BA.1 | 54.10 | Q19E (CAA → GAA) | M →  |
26,709 | G → A | BA.1 | 59.20 | A63T (GCT → ACT) | M →  |
27,807 | C → T | Neither | 64.90 | intergenic (+ 48/-87) | ORF7a → / → ORF8 |
28,271 | A → T | Neither | 67.50 | intergenic (+ 12/-3) | ORF8 → / → N |
28,311 | C → T | BA.1 | 65.30 | P13L (CCC → CTC) | N →  |
28,363 | Δ9 bp | Neither | 65.10 | coding (90–98/1260 nt) | N →  |
2,832 | A → G | BA.1 | 58.50 | K856R (AAG → AGG) | orf1ab →  |