Table 3 Mutations lost in sample 9
Position | Mutation | Lineage characteristic of | Sample 1 (%) | Sample 2 (%) | Sample 3 (%) | Sample 4 (%) | Sample 5 (%) | Sample 6 (%) | Sample 7 (%) | Sample 8 (%) | Sample 9 (%) | Annotation | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
315 | Δ3 bp | Neither | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 14.10 | coding (50–52/13203 nt) | orf1ab →  |
1,321 | A → C | B.1.1.176 | 58.60 | 92.70 | 86.30 | 91.70 | 77.50 | 23.20 | 100 | 100 | 23.00 | E352D (GAA → GAC) | orf1ab →  |
2,189 | C → T | Neither | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 |  | L642F (CTT → TTT) | orf1ab →  |
6,114 | C → T | Both | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 27.50 | P1950L (CCT → CTT) | orf1ab →  |
6,352 | G → T | Neither | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 36.10 | K2029N (AAG → AAT) | orf1ab →  |
8,208 | C → T | Neither | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 37.20 | T2648I (ACT → ATT) | orf1ab →  |
14,767 | G → T | B.1.1.176 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 30.30 | A4835S (GCT → TCT) | orf1ab →  |
21,621 | C → T | B.1.1.176 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 37.60 | T20I (ACC → ATC) ‡ | S →  |
22,632 | G → A | B.1.1.176 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 33.30 | R357K (AGA → AAA) | S →  |
25,386 | C → T | Neither | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 30.70 | intergenic (+ 2/-7) | S → / → ORF3a |
25,947 | G → T | B.1.1.176 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 16.60 | Q185H (CAG → CAT) | ORF3a →  |
28,361 | G → A | B.1.1.176 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 33.40 | G30R (GGA → AGA) | N →  |
28,905 | C → T | B.1.1.176 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 29.40 | A211V (GCT → GTT) | N →  |