Table 1 Viral isolate and associated host data for the 23 EHV-1 isolates sequenced (whole viral genome) for the present study
From: Phylogenomic assessment of 23 equid alphaherpesvirus 1 isolates obtained from USA-based equids
Isolate | Genbank Accession ID | Host State | Collection Date | Isolation Date | Tissue source | Host Age | Host Species | Host Sex | Disease Type | ORF30 A > G, 2254 | Synonymous Substitutions | Non-Synonymous Substitutions |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
LS0433182 | OR085515 | South Dakota | Unknown | 9/1/2004 | Unknown | 8Â years | Equus caballus | Female | Neurological | No | 138 | 62 |
LS050627 | OR085496 | North Dakota | Unknown | 6/27/2005 | Unknown | Unknown | Unknown | Unknown | Reproductive | Yes | 135 | 71 |
LS080124 | OR085497 | Indiana | Unknown | 1/24/2008 | Unknown | Unknown | Unknown | Unknown | Reproductive | No | 174 | 86 |
LS100106 | OR085498 | Indiana | Unknown | 1/6/2010 | Unknown | Unknown | Unknown | Unknown | Reproductive | No | 174 | 86 |
LS110097 | OR085499 | Iowa | 3/25/2011 | 11/7/2021 | Liver | Fetal | Unknown | Unknown | Reproductive | No | 174 | 87 |
LS110114 | OR085500 | Iowa | 4/6/2011 | 11/7/2021 | Lung | Fetal | Unknown | Unknown | Reproductive | No | 115 | 58 |
LS110976 | OR085501 | Iowa | 3/25/2011 | 11/7/2021 | Spleen | Fetal | Unknown | Unknown | Reproductive | No | 174 | 87 |
LS111457 | OR085502 | Iowa | 4/6/2011 | 11/7/2021 | Liver | Fetal | Unknown | Unknown | Reproductive | No | 132 | 43 |
LS113812 | OR085503 | Iowa | 2/4/2011 | 11/7/2021 | Liver | Fetal | Unknown | Unknown | Reproductive | No | 157 | 83 |
LS119764 | OR085504 | Iowa | 3/25/2011 | 11/7/2021 | Lung | Fetal | Unknown | Unknown | Reproductive | No | 116 | 49 |
LS130922 | OR085505 | Iowa | 1/8/2013 | 3/4/2013 | Unknown | Fetal | Unknown | Unknown | Reproductive | No | 174 | 71 |
LS140310 | OR085506 | Indiana | Unknown | 3/10/2014 | Unknown | Unknown | Unknown | Unknown | Reproductive | No | 236 | 111 |
LS140325 | OR085507 | Indiana | Unknown | 3/25/2014 | Unknown | Unknown | Unknown | Unknown | Reproductive | No | 158 | 85 |
LS143101 | OR085508 | Indiana | Unknown | 3/10/2014 | Unknown | Unknown | Unknown | Unknown | Reproductive | No | 228 | 115 |
LS161221 | OR085509 | Indiana | Unknown | 12/21/2016 | Unknown | Unknown | Unknown | Unknown | Reproductive | No | 191 | 88 |
LS161227 | OR085510 | Indiana | Unknown | 12/27/2016 | Unknown | Unknown | Unknown | Unknown | Reproductive | No | 227 | 91 |
LS170109 | OR085511 | Indiana | Unknown | 1/9/2017 | Unknown | Unknown | Unknown | Unknown | Reproductive | No | 261 | 104 |
LS170307 | OR085512 | Indiana | Unknown | 3/7/2017 | Unknown | Unknown | Unknown | Unknown | Reproductive | No | 145 | 93 |
LS180416 | OR085513 | Indiana | Unknown | 4/16/2018 | Unknown | Unknown | Unknown | Unknown | Reproductive | No | 297 | 120 |
LS213627 | OR085514 | Iowa | 4/22/2021 | 6/8/2021 | Lung | Unknown | Unknown | Unknown | Reproductive | No | 126 | 52 |
LS9719959 | OR085516 | Virginia | Unknown | 4/15/1997 | Unknown | Fetal | Equus caballus | Unknown | Reproductive | No | 114 | 38 |
LS9816616 | OR085517 | California | Unknown | 3/16/1998 | Unknown | Fetal | Equus caballus | Male | Reproductive | No | 294 | 112 |
LS9922376 | OR085518 | Virginia | Unknown | 5/5/1999 | Unknown | Fetal | Equus caballus | Female | Reproductive | No | 184 | 77 |