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Fig. 2 | Virology Journal

Fig. 2

From: Resurgence of SARS-CoV-2 Delta after Omicron variant superinfection in an immunocompromised pediatric patient

Fig. 2

Sequencing of longitudinal nasopharyngeal isolates reveals a Delta-Omicron superinfection. (A) Maximum Likelihood phylogeny of the consensus SARS-CoV-2 whole genome sequences from Illumina short read sequencing. (B) Temporal dynamics of SARS-CoV-2 lineages (Relative abundance for seven days moving average) from Chicago and Cook County during the course of hospitalization. (C) Temporal dynamics of SARS-CoV-2 lineages (Absolute abundance per day) from Chicago and Cook County during the course of hospitalization. (D) Maximum likelihood phylogenetic tree of SARS-CoV-2 genome sequences from the patient samples (large purple dots) with all publicly available sequences from Chicago and surrounding Cook County collected between January and February 15, 2022 (black dots; n = 1,345) and deposited in the GISAID database

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Virology Journal

ISSN: 1743-422X