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Table 1 phylogeny–trait association analysis for the phylogeographic structure of barley yellow dwarf virus using Bayesian tip-association significance testing

From: Global molecular evolution and phylogeographic analysis of barley yellow dwarf virus based on the cp and mp genes

Genes

Traits

Statistic

Isolates

Observed mean

(95% HPD CIs)

Null mean

(95% HPD CIs)

P-value

Coat protein

Regions

AI

 

9.594 (8.060-11.171)

23.771(22.505–24.884)

< 0.001

PS

 

69.683 (65.000–74.000)

133.948(131.112-136.113)

< 0.001

MC (Brazil)

25

4.892(4.000–6.000)

1.450(1.032–2.001)

0.010

MC (China)

218

11.213(10.000–15.000)

6.992(5.191–9.688)

0.040

MC (Estonia)

10

2.105(2.000–3.000)

1.101(1.000-1.557)

0.040

MC (Germany)

12

4.655(4.000–6.000)

1.174(1.000-1.971)

0.010

MC (New Zealand)

20

7.198(7.000–8.000)

1.265(1.004–1.992)

0.010

MC (Pakistan)

18

2.290(2.000–3.000)

1.215(1.001–1.981)

0.030

MC (South Korea)

29

3.256(2.000–5.000)

1.554(1.060–2.035)

0.020

MC (The United States)

24

7.000(7.000–7.000)

1.484(1.043–2.003)

0.010

Host

AI

 

4.339(3.448–5.242)

13.925(12.990-14.925)

< 0.001

PS

 

31.064(29.000–34.000)

70.339(68.528–71.874)

< 0.001

MC (Avena sativa)

39

5.957(6.000–6.000)

1.874(1.394–2.284)

0.010

MC (Hordeum vulgare)

24

10.409(9.000–12.000)

1.466(1.082–2.007)

0.010

MC (Microlaena stipoides)

10

7.000(7.000–7.000)

1.070(1.000-1.237)

0.010

MC (Triticum aestivum)

260

63.165(36.000–67.000)

11.634(9.076–15.605)

0.010

Movement protein

Regions

AI

 

11.031(9.296–12.790)

32.756(31.348_33.952)

< 0.001

PS

 

101.499(96.000-107.000)

207.387(204.936-209.816)

< 0.001

MC (Brazil)

25

2.273(1.000–4.000)

1.283(1.027–1.997)

0.030

MC(China)

242

18.866(18.000–19.000)

5.400(4.419–6.684)

0.010

MC (Estonia)

20

2.441(2.000–4.000)

1.265(1.016–1.994)

0.040

MC (Germany)

22

3.463(2.000–6.000)

1.290(1.016–1.987)

0.010

MC (New Zealand)

29

2.757(2.000–3.000)

1.405(1.081-2.000)

0.010

MC (Pakistan)

34

6.100(6.000–7.000)

1.564(1.185–2.070)

0.010

MC (South Korea)

35

5.798(4.000–7.000)

1.589(1.178–2.071)

0.010

MC (The United States)

51

8.082(7.000–9.000)

1.973(1.587–2.526)

0.010

Host

AI

 

13.562(11.853–15.271)

17.656(16.466–18.641

< 0.001

PS

 

83.743(80.000–87.000

97.639(95.001–99.535

< 0.001

MC (Avena sativa)

61

7.122(7.000–8.000)

2.112(1.832–2.583)

0.010

MC (Hordeum vulgare)

30

2.044(2.000–3.000)

1.487(1.177–2.015)

0.090

MC (Microlaena stipoides)

11

1.576(1.000–3.000)

1.081(1.000-1.270)

1.000

MC (Triticum aestivum)

313

21.495(21.000–25.000)

10.996(8.608–4.087)

0.020