Table 1 Nucleotide sequence identities (%) when comparing N4006 with RVA G9P[8]-E2, G9P[8]-E1 and G2P[4] from China and Japan
From: Reassortment and genomic analysis of a G9P[8]-E2 rotavirus isolated in China
strain | N1 | N2 | N3 | N4 | N5 | V1 | V2 | V3 | V4 | V6 | V7 |
|---|---|---|---|---|---|---|---|---|---|---|---|
CHN/E6398/2019/G9P8-E2 | 98.1 | 99.9 | 100 | 99.9 | 100 | 99.9 | 99.9 | 99.8 | 99.7 | 97.4 | 99.9 |
CHN/Fuzhou18-97/2018/G9P8-E2 | 98.1 | 99.9 | 100 | 99.9 | 99.7 | 99.8 | 99.7 | 99.6 | 99.7 | 97.4 | 99.5 |
CHN/Z2768/2019/G9P8-E2 | 98.2 | 99.8 | 99.9 | 100 | 100 | 99.9 | 99.9 | 99.8 | 99.8 | 97.4 | 99.9 |
CHN/L2448/2019/G9P8-E2 | 97.9 | 99.9 | 99.8 | 99.9 | 100 | 99.8 | 99.6 | 99.7 | 99.7 | 97.4 | 99.7 |
CHN/SZ18442015/2018/G9P8-E2 | 97.9 | 99.9 | 100 | 99.7 | 100 | 99.9 | 99.7 | 99.7 | 99.7 | 97.3 | 99.8 |
CHN/SZ18442205/2018/G9P8-E2 | 98.1 | 99.8 | 100 | 99.9 | 100 | 99.9 | 99.5 | 99.6 | 99.5 | 96.8 | 99.6 |
CHN/Fuzhou19-58/2019/G9P8-E1 | 97.8 | 99.6 | 99.7 | 83.6 | 99.3 | 99.5 | 98.4 | 99.4 | 99.7 | 97.8 | 99.4 |
CHN/Fuzhou19-84/2019/G9P8-E1 | 98.1 | 98.9 | 99.2 | 83.8 | 99.3 | 98.4 | 98.4 | 98.3 | 97.6 | 96.8 | 92.4 |
CHN/LL09131481-2009/G9P8/E1 | 97.2 | 99 | 99.9 | 82.9 | 97.5 | 10.6 | 21.7 | 22.7 | 36.1 | 99.2 | 93.2 |
JPN/Tokyo18-27/2018/G9P8-E2 | 96.8 | 99.8 | 99.9 | 99.9 | 100 | 99.8 | 99.8 | 99.6 | 99.6 | 97.4 | 99.7 |
JPN/Tokyo18-38/2018/G9P8-E2 | 98.2 | 99.7 | 99.9 | 100 | 100 | 99.9 | 99.7 | 99.7 | 99.7 | 97.3 | 99.7 |
JPN/Tokyo18-30/2018/G9P8-E2 | 97.9 | 99.7 | 99.7 | 99.7 | 100 | 99.8 | 99.7 | 99.7 | 99.7 | 97.4 | 99.8 |
JPN/Tokyo18-43/2018/G9P8-E2 | 97.7 | 99.9 | 100 | 99.9 | 100 | 99.9 | 99.7 | 99.7 | 99.7 | 97.4 | 99.8 |
JPN/Tokyo18-50/2018/G9P8-E1 | 97.1 | 99.8 | 99.7 | 83.9 | 100 | 99.8 | 99.8 | 98.2 | 99.7 | 97.4 | 99.7 |
JPN/Tokyo18-37/2018/G9P8-E1 | 97.9 | 98.9 | 99.8 | 83.9 | 99 | 98 | 98.1 | 98.2 | 99.3 | 98.7 | 92.8 |
JPN/Tokyo16-4754/2017/G9P8-E1 | 97.9 | 99.9 | 99.1 | 83.6 | 99.3 | 99.6 | 99.7 | 99.4 | 99.6 | 97.7 | 99.5 |
JPN/Tokyo16-3571/2017/G9P8-E1 | 98.1 | 99.8 | 97.7 | 83.6 | 99.3 | 99.7 | 99.7 | 99.4 | 99.5 | 97.7 | 99.6 |
JPN/Tokyo17-15/2017/G2P4 | 74.4 | 83.3 | 78.3 | 99.9 | 83.8 | 79.6 | 79.3 | 77.6 | 86.4 | 79.6 | 74.6 |
JPN/Tokyo17-17/2017/G2P4 | 75.6 | 83 | 78.3 | 99.6 | 83.7 | 79.8 | 79.7 | 77.1 | 86.3 | 79.5 | 74.5 |
JPN/YR116/2013/G2P4 | 75.8 | 83.2 | 78.4 | 100 | 81.3 | 79.8 | 79.6 | 77.1 | 86.6 | 79.4 | 74.6 |
JPN/KN161/2014/G2P4 | 75.6 | 83.1 | 78.4 | 100 | 83.7 | 79.7 | 79.6 | 77.2 | 86.6 | 79.4 | 74.4 |