TaME-seq2: tagmentation-assisted multiplex PCR enrichment sequencing for viral genomic profiling

Table 4 Overview of MNV calling results in eight HPV replicates

Sample ID	# of identically called MNVs in Run 1 and Run 2	# of MNVs called only in	# of MNVs called differently between runs	Total # of MNVs found		Mean coverage of the called MNVs
Sample ID	# of identically called MNVs in Run 1 and Run 2	Run1	Run2	Run1	Run2	Run1	Run2
1-HPV51	1	12	11	13	12	37	219
2-HPV52	0	22	22	22	22	60	32
3-HPV52	1	2	7	3	8	653	77
4-HPV51	2	5	7	7	9	465	100
5-HPV52	1	24	12	25	13	34	41
6-HPV52	1	11	29	12	30	39	53
7-HPV51	0	4	5	4	5	1231	23
8-HPV52	3	0	5	3	8	676	282

For each pair of samples, the number of identical MNVs between runs, the number of MNVs called only in one of the runs, the number of MNVs differing between runs is shown, and the total number of MNVs found. Mean coverage of the called MNVs in two runs is also presented

ISSN: 1743-422X