Snake River alfalfa virus, a persistent virus infecting alfalfa (Medicago sativa L.) in Washington State, USA

Postnikova, Olga A.; Irish, Brian M.; Eisenback, Jonathan; Nemchinov, Lev G.

doi:10.1186/s12985-023-01991-7

Virology Journal

Table 1 Occurrence of SRAV-related reads in 10 commercial alfalfa fields (five samples per field) of Grant County, Washington State

From: Snake River alfalfa virus, a persistent virus infecting alfalfa (Medicago sativa L.) in Washington State, USA

Sample ID	Length	Covered %	Covered bases	Total viral reads	Reads/sample	Yield (Mb)	% ≥ Q30
A2-1	11,872	100	11,872	8079	31,990,204	4831	94.56
A1-4	11,872	99.9832	11,870	27,925	37,707,294	5694	94.54
A4-3	11,872	99.9663	11,868	22,147	39,187,338	5917	94.75
B8-4	11,872	99.9579	11,867	15,093	45,330,070	6845	95.26
A3-4	11,872	99.9326	11,864	44,605	44,468,798	6715	94.77
A3-5	11,872	99.7473	11,842	32,167	34,259,318	5173	94.76
B8-2	11,872	99.7136	11,838	47,175	44,581,834	6732	95.21
A5-5	11,872	99.6715	11,833	21,219	45,938,534	6937	94.76
B6-5	11,872	99.6631	11,832	13,815	44,882,040	6777	95.29
A5-4	11,872	99.6462	11,830	8513	34,368,240	5190	94.66
B8-5	11,872	99.621	11,827	53,101	37,624,098	5681	95
A1-2	11,872	99.5788	11,822	28,724	42,968,950	6488	94.74
A3-1	11,872	99.5115	11,814	33,926	42,255,734	6381	94.78
A2-2	11,872	99.4862	11,811	71,267	37,337,248	5638	94.71
B6-1	11,872	99.4862	11,811	17,265	47,716,504	7205	93.95
B7-5	11,872	99.4525	11,807	25,870	31,743,182	4793	95.13
A1-5	11,872	99.4441	11,806	20,408	46,898,746	7082	94.9
B6-4	11,872	99.4104	11,802	24,605	36,660,924	5536	95.13
B7-4	11,872	99.402	11,801	29,217	39,153,470	5912	95.18
B8-1	11,872	99.402	11,801	44,383	33,674,988	5085	94.86
A1-3	11,872	99.3851	11,799	14,704	34,965,248	5280	94.65
A2-5	11,872	99.3851	11,799	27,777	50,933,376	7691	94.69
A4-4	11,872	99.3851	11,799	20,253	31,710,774	4788	94.62
A5-2	11,872	99.3851	11,799	14,048	42,018,256	6345	94.7
B10-4	11,872	99.3851	11,799	16,305	35,022,936	5288	95.1
B8-3	11,872	99.3851	11,799	37,761	36,163,008	5461	95.34
B9-3	11,872	99.3851	11,799	26,815	41,588,106	6280	95.12
B6-3	11,872	99.3767	11,798	30,672	43,616,596	6586	95.3
B9-4	11,872	99.3767	11,798	10,475	50,653,058	7649	95.3
A2-3	11,872	99.3683	11,797	64,184	39,012,034	5891	94.7
A4-1	11,872	99.3683	11,797	12,057	35,547,054	5368	94.6
A5-3	11,872	99.3683	11,797	7016	50,538,150	7631	94.98
B6-2	11,872	99.3683	11,797	8332	55,187,384	8333	95.25
B7-1	11,872	99.3683	11,797	39,608	35,432,658	5350	95.2
B7-3	11,872	99.3683	11,797	28,372	45,878,018	6928	95.27
B9-2	11,872	99.3683	11,797	12,085	43,347,806	6546	95.11
A2-4	11,872	99.3514	11,795	19,539	32,282,770	4875	94.76
A4-5	11,872	99.343	11,794	4425	32,902,614	4968	94.63
B7-2	11,872	99.343	11,794	10,734	35,619,196	5378	95.05
B10-5	11,872	98.8376	11,734	9244	35,500,288	5361	95.15
B9-5	11,872	98.5428	11,699	10,684	37,603,012	5678	95.42
A3-2	11,872	98.0374	11,639	1288	39,786,654	6008	94.56
A3-3	11,872	96.6139	11,470	1035	40,166,166	6065	94.71
A1-1	11,872	85.3858	10,137	392	49,277,406	7441	94.78
B10-3	11,872	41.9643	4982	83	41,582,718	6279	95.19
A5-1	11,872	40.0775	4758	94	40,943,890	6183	94.85
B10-2	11,872	38.0475	4517	73	33,886,868	5117	94.98
B9-1	11,872	30.4835	3619	59	35,593,490	5375	95.07
B10-1	11,872	26.9794	3203	46	37,715,730	5695	95.36
A4-2	11,872	22.7257	2698	51	36,605,156	5527	94.69

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ISSN: 1743-422X

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