From: Metagenomic analysis of viral diversity and a novel astroviruse of forest rodent
Sample | Insert size (bp) | Seq strategy | Raw data | Clean data | Clean_Q20 | Clean_Q30 | Clean_GC (%) | Effective (%) |
---|---|---|---|---|---|---|---|---|
Myodes rufocanus | 350 | (150:150) | 2,504.06 | 2,384.93 | 76.53 | 65.45 | 58.69 | 95.242 |
Apodemus peninsulae | 350 | (150:150) | 2,234.18 | 2,090.33 | 75.94 | 64.76 | 57.70 | 93.561 |
Apodemus agrarius | 350 | (150:150) | 2,045.27 | 1,994.32 | 87.12 | 78.68 | 52.56 | 97.509 |
Tamias sibiricus | 350 | (150:150) | 2,459.21 | 2,391.77 | 83.63 | 73.78 | 52.87 | 97.258 |
Sciurus vulgaris | 350 | (150:150) | 2,155.58 | 2,007.30 | 73.76 | 62.15 | 59.05 | 93.121 |
Cricetulus triton | 350 | (150:150) | 2,270.82 | 2,148.70 | 78.59 | 67.93 | 55.53 | 94.622 |