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Table 2 Pairwise results of recent Egyptian FMDV isolate (A/Egy/1028) showing first 10 Hits of BLAST and the most closely related prototype and result of alignment with local vaccinal strains

From: Molecular detection, phylogenetic analysis and genetic diversity of recently isolated foot-and-mouth disease virus serotype A African topotype, Genotype IV

No Description Accession number Per. query coverage (%) Per. identity (%) Serotype Topotype Genotype Remarks
1 Ismailia 1/Egy/2016 KX446996.1 100 94.79 A Africa IV First 10 Hits of BLAST result
2 A/EGY/8/2015 MK422573.1 100 94.47 A Africa IV
3 Ismailia 2/Egy/2016 KX446997.1 100 94.47 A Africa IV
4 A/Egy/Faiyum/2016 MG552843.1 100 94.31 A Africa IV
5 A/cow/Dakahlia/Egypt/2016 MT863264.1 100 94.31 A Africa IV
6 A/buffalo/Damietta/Egypt/2016 MT863268.1 100 94.15 A Africa IV
7 A/buffalo/Damietta/Egypt/2016 MT863266.1 100 94.15 A Africa IV
8 ETH/19/2015 VP1 gene MN987497.1 100 93.84 A Africa IV
9 Beni-suef1/Egy/2017 MF322693.1 100 93.84 A Africa IV
10 A/SUD/6/2018 MK422591.1 100 93.05 A Africa IV
11 SUD/3/77 GU566064.1 100 84.25 A Africa IV Prototype sequence
12 EGY 1/2012 KC440882.1 88 78.25 A ASIA Iran-05 Local vaccine strain