Table 2 Pairwise results of recent Egyptian FMDV isolate (A/Egy/1028) showing first 10 Hits of BLAST and the most closely related prototype and result of alignment with local vaccinal strains
No | Description | Accession number | Per. query coverage (%) | Per. identity (%) | Serotype | Topotype | Genotype | Remarks |
|---|---|---|---|---|---|---|---|---|
1 | Ismailia 1/Egy/2016 | KX446996.1 | 100 | 94.79 | A | Africa | IV | First 10 Hits of BLAST result |
2 | A/EGY/8/2015 | MK422573.1 | 100 | 94.47 | A | Africa | IV | |
3 | Ismailia 2/Egy/2016 | KX446997.1 | 100 | 94.47 | A | Africa | IV | |
4 | A/Egy/Faiyum/2016 | MG552843.1 | 100 | 94.31 | A | Africa | IV | |
5 | A/cow/Dakahlia/Egypt/2016 | MT863264.1 | 100 | 94.31 | A | Africa | IV | |
6 | A/buffalo/Damietta/Egypt/2016 | MT863268.1 | 100 | 94.15 | A | Africa | IV | |
7 | A/buffalo/Damietta/Egypt/2016 | MT863266.1 | 100 | 94.15 | A | Africa | IV | |
8 | ETH/19/2015 VP1 gene | MN987497.1 | 100 | 93.84 | A | Africa | IV | |
9 | Beni-suef1/Egy/2017 | MF322693.1 | 100 | 93.84 | A | Africa | IV | |
10 | A/SUD/6/2018 | MK422591.1 | 100 | 93.05 | A | Africa | IV | |
11 | SUD/3/77 | GU566064.1 | 100 | 84.25 | A | Africa | IV | Prototype sequence |
12 | EGY 1/2012 | KC440882.1 | 88 | 78.25 | A | ASIA | Iran-05 | Local vaccine strain |