Evolutionary genomics of APSE: a tailed phage that lysogenically converts the bacterium Hamiltonella defensa into a heritable protective symbiont of aphids

Table 1 APSE haplotypes with fully sequenced genomes examined in this study

Haplotype	Bacterial host	Insect host	Toxin	Data type	Assembly type	References	NCBI identifier
APSE1	H. defensa	Acrythosiphon pisum	stxB	Phage genome	Whole genome	[8]	NC_000935.1
APSE3 AS3	H. defensa AS3	Acrythosiphon pisum	YD-repeat	Contig/scaffold	Whole genome	[56]	NZ_CP017610.1
APSE2 5AT	H. defensa 5AT	Acrythosiphon pisum	cdtB	Contig/scaffold	Whole genome	[56]	NZ_CP001277.1
APSE2 NY26	H. defensa NY26	Acrythosiphon pisum	cdtB	Contig/scaffold	Whole genome	[56]	NZ_CP017605.1
APSE8 ZA17	H. defensa ZA17	Acrythosiphon pisum	cdtB	Contig/scaffold	Whole genome	[56]	NZ_CP17613.1
APSE MEAM	H. defensa MEAM	Bemisia tabaci	cdtB	Contig/scaffold	Whole genome	[38]	CCVN0000000
APSE MED	H. defensa MED	Bemisia tabaci	cdtB	Contig/scaffold	Whole genome	[51]	GCF_000258345.2
APSE1 MI47	H. defensa MI47	Acrythosiphon pisum	cdtB	Contig/scaffold	Whole genome	This study	NZ_CP022932.1
APSE9 MI12	H. defensa MI12	Acrythosiphon pisum	cdtB	Contig/scaffold	Whole genome	This study	CP023987.1
APSE8 5D	H. defensa 5D	Acrythosiphon pisum	cdtB	Contig/scaffold	Whole genome	This study	NZ_CP021663.1

ISSN: 1743-422X