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Table 2 Prevalence of RPP target pathogens among SARS-CoV-2-positive and -negative specimens

From: Broad respiratory testing to identify SARS-CoV-2 viral co-circulation and inform diagnostic stewardship in the COVID-19 pandemic

The RPP target detected Specimens with SARS-CoV-2 detected Specimens with SARS-CoV-2 not detected
Overall
(n = 1 141)
 ≥ 1 RPP target also detected
(n = 39)
Overall
(n = 51,129)
1 RPP target detected
(n = 5 322)
 ≥ 2 RPP target detected
(n = 362)
% # % # % # % # % #
Endemic coronaviruses           
 229E 0 0 0.2 98 1.7 89 2.5 9
 NL63 0.2 2 5.1 2 1.1 565 9.2 488 19.6 71
 OC43 0 0 0.3 140 2.4 128 2.7 10
 HKU1 0 0 0.3 136 2.2 119 4.7 17
Influenza viruses           
 A 0.1 1 2.6 1 1.1 555 9.4 502 12.2 44
 B 0 0 0.5 236 3.9 207 7.5 27
Respiratory syncytial virus           
 A 0 0 0.7 379 6.0 319 16.0 58
 B 0 0 0.1 59 1.0 55 1.1 4
Parainfluenza viruses           
 1 0 0 0.1 45 0.6 33 2.8 10
 2 0.1 1 2.6 1 0.1 43 0.6 33 2.8 10
 3 0 0 0.1 56 0.9 49 1.7 6
 4 0 0 0.2 89 1.2 62 7.2 26
Enterovirus/rhinovirus 2.3 26 66.7 26 4.3 2 201 36.2 1 925 64.9 235
Human metapneumovirus 0.1 1 2.6 1 1.6 820 13.6 725 24.0 87
Adenovirus 0.7 8 20.5 8 0.9 441 6.1 324 29.3 106
M. pneumoniae 0.1 1 2.6 1 0.6 296 5.0 264 8.6 31
  1. Bold to just highlight all of the data in the percentage columns (every other column)
  2. RPP Respiratory Pathogen Panel