Table 2 Prevalence of RPP target pathogens among SARS-CoV-2-positive and -negative specimens
The RPP target detected | Specimens with SARS-CoV-2 detected | Specimens with SARS-CoV-2 not detected | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Overall (nā=ā1 141) | āā„ā1 RPP target also detected (nā=ā39) | Overall (nā=ā51,129) | 1 RPP target detected (nā=ā5 322) | āā„ā2 RPP target detected (nā=ā362) | ||||||
% | # | % | # | % | # | % | # | % | # | |
Endemic coronaviruses | Ā | Ā | Ā | Ā | Ā | Ā | Ā | Ā | Ā | Ā |
Ā 229E | ā | 0 | ā | 0 | 0.2 | 98 | 1.7 | 89 | 2.5 | 9 |
Ā NL63 | 0.2 | 2 | 5.1 | 2 | 1.1 | 565 | 9.2 | 488 | 19.6 | 71 |
Ā OC43 | ā | 0 | ā | 0 | 0.3 | 140 | 2.4 | 128 | 2.7 | 10 |
Ā HKU1 | ā | 0 | ā | 0 | 0.3 | 136 | 2.2 | 119 | 4.7 | 17 |
Influenza viruses | Ā | Ā | Ā | Ā | Ā | Ā | Ā | Ā | Ā | Ā |
Ā A | 0.1 | 1 | 2.6 | 1 | 1.1 | 555 | 9.4 | 502 | 12.2 | 44 |
Ā B | ā | 0 | ā | 0 | 0.5 | 236 | 3.9 | 207 | 7.5 | 27 |
Respiratory syncytial virus | Ā | Ā | Ā | Ā | Ā | Ā | Ā | Ā | Ā | Ā |
Ā A | ā | 0 | ā | 0 | 0.7 | 379 | 6.0 | 319 | 16.0 | 58 |
Ā B | ā | 0 | ā | 0 | 0.1 | 59 | 1.0 | 55 | 1.1 | 4 |
Parainfluenza viruses | Ā | Ā | Ā | Ā | Ā | Ā | Ā | Ā | Ā | Ā |
Ā 1 | ā | 0 | ā | 0 | 0.1 | 45 | 0.6 | 33 | 2.8 | 10 |
Ā 2 | 0.1 | 1 | 2.6 | 1 | 0.1 | 43 | 0.6 | 33 | 2.8 | 10 |
Ā 3 | ā | 0 | ā | 0 | 0.1 | 56 | 0.9 | 49 | 1.7 | 6 |
Ā 4 | ā | 0 | ā | 0 | 0.2 | 89 | 1.2 | 62 | 7.2 | 26 |
Enterovirus/rhinovirus | 2.3 | 26 | 66.7 | 26 | 4.3 | 2 201 | 36.2 | 1 925 | 64.9 | 235 |
Human metapneumovirus | 0.1 | 1 | 2.6 | 1 | 1.6 | 820 | 13.6 | 725 | 24.0 | 87 |
Adenovirus | 0.7 | 8 | 20.5 | 8 | 0.9 | 441 | 6.1 | 324 | 29.3 | 106 |
M. pneumoniae | 0.1 | 1 | 2.6 | 1 | 0.6 | 296 | 5.0 | 264 | 8.6 | 31 |