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Table 6 Pairwise phylogenetic distance between Nanopore and Illumina-generated consensus sequences

From: Assessment of a multiplex PCR and Nanopore-based method for dengue virus sequencing in Indonesia

Serotype

Genotype

Source

Genetic Distance from Illumina-generated consensus (1X)

Genetic Distance from Illumina-generated consensus (20X)

1

I

Reference

0.00107

0.00092

1

IV

Clinical

0.00422

0.00123

2

IV

Reference

0.00517

0.00153

2

Cosmopolitan

Clinical

0.00196

0.00051

3

V

Reference

0.00735

0.00277

3

I

Clinical

0.00890

0.00299

4

I

Reference

0.00856

0.00311

4

II

Clinical

0.00825

0.00274

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Virology Journal

ISSN: 1743-422X