Table 2 Sequencing primers for HA and NA of A(H1N1)pdm09 virus
Primers (F/R) | Gene (subtype) | Locus | Sequence (5′–3′) |
|---|---|---|---|
A-uni-HA-1F | HA | 1–28 | TATTCGTCTCAGGGAGCAAAAGCAGGGG |
HA-H1-345F | HA (H1) | 345–365 | GGAACGTGTTACCCAGGAGAT |
HA-H1-680F | HA (H1) | 680–701 | TCAAGCCGGAAATAGCAATAAG |
HA-H1-1137F | HA (H1) | 1137–1156 | AGCCGACCTGAAGAGCACAC |
HA-H1-714R | HA (H1) | 691–714 | CCTCACTTTGGGTCTTATTGCTAT |
HA-H1-1093R | HA (H1) | 1072–1093 | CATCCATCTACCATCCCTGTCC |
HA-H1-1330R | HA (H1) | 1309–1330 | GCATTGTAAGTCCAAATGTCCA |
A-uni-HA-1807R | HA | 1773–1807 | ATATCGTCTCGTATTAGTAGAAACAAGGGTGTTTT |
A-uni-NA-1F | NA | 1–29 | TATTGGTCTCAGGGAGCAAAAGCAGGAGT |
H1-NA-324F | NA (N1) | 324–345 | GGTTCCAAGGGGGATGTGTTTG |
H1-NA-744F | NA (N1) | 744–766 | TGGACAGGCCTCATACAAGATCT |
H1-NA-645R | NA (N1) | 622–645 | AGTGTCTGTTATTATTCCGTTGTA |
H1-NA-1010F | NA (N1) | 985–1010 | CAGTATCGTCTAATGGAGCAAATGGA |
H1-NA-1057R | NA (N1) | 1036–1057 | CTATCCAAACACCATTGCCGTA |
A-uni-NA-1442R | NA | 1407–1442 | ATATGGTCTCGTATTAGTAGAAACAAGGAGTTTTTT |