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Table 3 HPV18 LCR nucleotide variant sites and pattern number

From: Genetic variability, phylogeny and functional implication of the long control region in human papillomavirus type 16, 18 and 58 in Chengdu, China

Nucleotide positon 7140 7164 7184 7258 7403 7486 7524 7529 7530 7563 7564 7567 7592 7670 7694 7716 7720 7753 7754 7853 7857 2 19 24 33 41 53 55 69 104 Pattern
G C C T A C G C T G A A T A T C C T C T C T T T A A T G T T No. amount
HPV18 NC01 – – – – – – – – – – – – C – – – – – – G – – – – – – – – – – 1 2
HPV18 NC02 – – – – – – – – – – – – C – – – – – – – – – – – – – – – – – 2 12
HPV18 NC03 – – – A – T – A – – – C C T – – – – – – – – – – – – – – – C 3 3
HPV18 NC05 – – – – – – A – – – – – C – – – – – – – – – – – – – – – – – 4 2
HPV18 NC06 – – – A – – – A – – – C C T – – – G T – – – – – – G – – – C 5 1
HPV18 NC07 – – – – – – – – – – – – C – – – – – – – – – G – – – – – – – 6 2
HPV18 NC11 – – – – C – – – – – – – C – – – – – – – – – – – – – – – – – 7 2
HPV18 NC14 A – – – – – – – – – – – C – – – – – – – – – – – – – – – – – 8 2
HPV18 NC15 – – – – – – – – – – – – C – – – – – – – – – – – T – – – – – 9 1
HPV18 NC16 – – – – – – – – – – – – C – – – – – – – T – – – – – G C G – 10 1
HPV18 NC19 – – – – – – – – – – – – C – – – – – – – – G – – – – – – G – 11 1
HPV18 NC20 – – – – – – – – – – – – C – – – – – – – – – – A – – – – – – 12 1
HPV18 NC21 – – – – – – – – – – – – C – – – – – – – – – – – – – – – G – 13 1
HPV18 NC25 – – – – – – – – – – – – C – – – – – – – T – – – – – – – – – 14 1
HPV18 NC33 – – – A – – – A A A C C C T G T A – – – – – – – – – – – – – 15 1
HPV18 NC34 – A T A – T – A – A – C C T – – – – – – – – – – – – – – – – 16 1
  1. Same nucleotide compared to the reference sequence were marked with a dash (−). N noted novel variants of this study. We gave a specific pattern No. to identical LCR sequence. The sample amounts of each pattern were listed at last column
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Virology Journal

ISSN: 1743-422X