Table 3 HPV18 LCR nucleotide variant sites and pattern number
Nucleotide positon | 7140 | 7164 | 7184 | 7258 | 7403 | 7486 | 7524 | 7529 | 7530 | 7563 | 7564 | 7567 | 7592 | 7670 | 7694 | 7716 | 7720 | 7753 | 7754 | 7853 | 7857 | 2 | 19 | 24 | 33 | 41 | 53 | 55 | 69 | 104 | Pattern | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G | C | C | T | A | C | G | C | T | G | A | A | T | A | T | C | C | T | C | T | C | T | T | T | A | A | T | G | T | T | No. | amount | |
HPV18 NC01 | – | – | – | – | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | G | – | – | – | – | – | – | – | – | – | – | 1 | 2 |
HPV18 NC02 | – | – | – | – | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 2 | 12 |
HPV18 NC03 | – | – | – | A | – | T | – | A | – | – | – | C | C | T | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | C | 3 | 3 |
HPV18 NC05 | – | – | – | – | – | – | A | – | – | – | – | – | C | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 4 | 2 |
HPV18 NC06 | – | – | – | A | – | – | – | A | – | – | – | C | C | T | – | – | – | G | T | – | – | – | – | – | – | G | – | – | – | C | 5 | 1 |
HPV18 NC07 | – | – | – | – | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | – | – | – | G | – | – | – | – | – | – | – | 6 | 2 |
HPV18 NC11 | – | – | – | – | C | – | – | – | – | – | – | – | C | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 7 | 2 |
HPV18 NC14 | A | – | – | – | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 8 | 2 |
HPV18 NC15 | – | – | – | – | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | – | – | – | – | – | T | – | – | – | – | – | 9 | 1 |
HPV18 NC16 | – | – | – | – | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | – | T | – | – | – | – | – | G | C | G | – | 10 | 1 |
HPV18 NC19 | – | – | – | – | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | – | – | G | – | – | – | – | – | – | G | – | 11 | 1 |
HPV18 NC20 | – | – | – | – | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | – | – | – | – | A | – | – | – | – | – | – | 12 | 1 |
HPV18 NC21 | – | – | – | – | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | G | – | 13 | 1 |
HPV18 NC25 | – | – | – | – | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | – | T | – | – | – | – | – | – | – | – | – | 14 | 1 |
HPV18 NC33 | – | – | – | A | – | – | – | A | A | A | C | C | C | T | G | T | A | – | – | – | – | – | – | – | – | – | – | – | – | – | 15 | 1 |
HPV18 NC34 | – | A | T | A | – | T | – | A | – | A | – | C | C | T | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 16 | 1 |