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Table 3 Domains and motifs of PyVs used in this study

From: Codon usage patterns of LT-Ag genes in polyomaviruses from different host species

No.Abbr.Accession no.DnaJ domainLXCXE motifHelicase domain
StartEndnt lengthStartEnda.a. sequenceStartEndnt length
1BatPyV4aNC_038556.11267168107111LRCDE405564480
2ApanPyV1NC_019853.11277198122126LFCNE441601483
3BatPyV5b-1NC_026767.11274189376536483
4BatPyV5aNC_026768.11267168382546495
5OraPyV-BorNC_013439.11277198122126LFCDE422602543
6CardiodermaPyVNC_020067.11277198212216LYCDE556716483
7BatPyV4bNC_028120.1152156LLCEE458651582
8ChPyVNC_014743.11296255379580606
9VmPyV1NC_019844.11280207107111LHCNE479640486
10VmPyV3NC_025898.11275192131135LFCSE462622483
11EidolonPyVNC_020068.1236240LRCDE588752495
12GgorgPyV1NC_025380.1200204LFCDE554714483
13HPyV9NC_015150.11286225123127LFCSE446606483
14HPyV12NC_020890.1473635489
15MfasPyV1NC_019851.11286225125129LFCTE465665603
16MCPyVNC_010277.2212216LFCDE567727483
17HaPyVNC_001663.2130134LTCQE522682483
18BatPyV3bNC_028123.1107111LYCDE467630492
19MPyVNC_001515.2142146LFCYE549709483
20NJPyVNC_024118.11280207107111LHCDE476636483
21OtomopsPyVNC_020066.11292243107111LYCDE483643483
22OtomopsPyV1NC_020071.1185189LRCDE520680483
23PtrovPyV2aNC_025370.1200204LFCDE556716483
24PtrovPyV3NC_019855.11275192486646483
25PtrovPyV4NC_019856.11275192489646474
26PtrovPyV5NC_019857.11286225123127LFCSE439599483
27PtrosPyV2NC_019858.11285222108112LYCSE432632603
28PtrovPyV1aNC_025368.1203207LYCDE558718483
29PbadPyV2NC_039051.11292243107111LHCNE476637486
30PrufPyV1NC_019850.11293246107111LHCNE476637486
31RacPyVNC_023845.1167171LFCEE504685546
32RnorPyV1NC_027531.1128132LYCSE535698492
33BatPyV3a-B0454NC_038557.1107111LHCHE477637483
34OraPyV-SumNC_028127.11275192489649483
35TSPyVNC_014361.11277198122126LFCHE445605483
36YbPyV1NC_025894.11275192131135LFCSE463663603
37AelPyV1NC_022519.1400564495
38BatPyV2cNC_038558.1223227LLCEE559719483
39BVPyVNC_028117.11267168146150LTCHE383574576
40BatPyV6aNC_026762.18488LFCHE395557489
41BatPyV6bNC_026770.198102LFCHE407570492
42BatPyV6cNC_026769.1100104LFCRE426587486
43SLPyVNC_013796.11277198113117LHCHE397556480
44CalbPyV1NC_019854.2100104LFCNE410570483
45CeryPyV1NC_025892.11275192105109LFCHE402562483
46VmPyV2NC_025896.11275192105109LFCHE402562483
47CVPyVNC_028119.11267168145149LSCNE382573576
48BatPyV2aNC_028122.11280207406565480
49EPyVNC_017982.11286225105109LRCDE402562483
50BKPyVNC_001538.11275192105109LFCHE402562483
51KIPyVNC_009238.1108112LRCNE410572489
52JCPyVNC_001699.11275192105109LFCHE401561483
53WsPyVNC_032120.11277198113117LHCNE400561486
54SV40NC_001669.11275192103107LFCSE400560483
55MasPyVNC_025895.1101105LFCNE414576489
56MmelPyV1NC_026473.11280207111115LRCDE365559585
57MiniopterusPyVNC_020069.11275192103107LHCHE369560576
58MPtVNC_001505.2103107LFCNE418573468
59MyPyVNC_011310.1441603489
60PtrovPyV8NC_028635.11275192105109LFCHE402562483
61PteronotusPyVNC_020070.11280207108112LRCDE405564480
62BatPyV2bNC_028121.11280207108112LRCDE406617636
63RatPyV2NC_032005.11279204178182LHCDE474634483
64SsciPyV1NC_038559.1101105LFCHE410572489
65SquiPyVNC_009951.1101105LFCHE411570480
66AlPyVNC_034251.11267168107111LYCNE407567483
67WUPyVNC_009539.11289234108112LRCNE417579489
68YbPyV2AB767295.21275192105109LFCHE402562483
69HPyV6NC_014406.1109113LYCDE393571537
70HPyV7NC_014407.1109113LYCTE416576483
71MWPyVNC_018102.1105109LSCNE421580480
72STLPyVNC_020106.11283216105109LTCNE406566483
73ADPyVNC_026141.28611626973LYCEE408582525
74BFDVNC_004764.2682231372532483
75Butcherbird PyVNC_023008.18671807074LFCDE410572489
76CaPyVNC_017085.18611626771LSCNE390550483
77CpyVNC_007922.111802106973LQCEE405569495
78EgouPyV1NC_039052.18752047074LYCEE374572597
79FPyVNC_007923.16701956064LFCDE382543486
80GHPVNC_004800.18812226569LFCDE404599588
81HunFPyVNC_039053.16772166064LFCDE382543486
82BassPyV1NC_025790.1105109LMCGE338495474
83BPyVNC_001442.110731929397LHCDE391586588
84DPyVNC_025899.111772018286LYCDE357536540
85GfPyV1NC_026244.1348517510
86SspPyVNC_026944.1372529474
  1. ScanProsite results together with ProRule-based predicted intra-domain features were used for functional domains retained in LT-Ag of PyVs. LXCXE motifs and their encoding sequences were extracted through the JAVA programming