Intra-species recombination among strains of the ampelovirus Grapevine leafroll-associated virus 4

Table 1 List and identifiers of Grapevine leafroll-associated virus 4 strains used in this study. The genome size and length of non-translated regions are shown as nt and open reading frames (ORFs) are shown as aa. Asterisk indicate partial sequence at the 5′-terminus of the virus genome

Strain	Isolate	Accession	Source	genome	5′ NTR	ORF1a	ORF1b	p5	HSP70	p60	CP	p23	3′ NTR
Strain		number		nt	nt	aa	aa	aa	aa	aa	aa	aa	nt
Strain 4	WAMR4	MF669483.1	WA, USA	13,824	215	2344	517	46	533	539	272	207	128
Strain 4	LR106	FJ467503.1	CA, USA	13,830	216	2345	517	46	533	539	272	207	129
Strain 5	WASB5	MF669481.1	WA, USA	13,820	215	2378	517	46	533	539	269	207	129
	3138–03	JX559639.1	Canada	13,823	217	2378	517	46	533	539	269	207	130
	TRAJ1-BR	KX828702.1	Brazil	13,823	217	2378	517	46	533	539	269	207	130
	Y217	FR822696.2	NY, USA	13,384	82*	2241*	517	46	533	539	269	207	129
Strain 6	Estellat	FJ467504.1	CA, USA	13,807	215	2378	517	46	572	539	269	207	130
Strain 9	WALA9	MF669482.1	WA, USA	13,850	215	2355	517	46	574	539	268	207	125
Strain 9	Man086	KJ810572.2	Spain	13,858	218	2355	517	46	574	539	268	207	127
Strain Car	Carnelian	FJ907331.1	CA, USA	13,626	214	2287	516	46	534	539	267	207	132
Strain Pr	Pr	AM182328.4	Greece	13,696	213	2294	517	46	533	539	273	207	128
Strain Ob	Ob	KP313764.1	Switzerland	12,849	37*	2076	526	46	581	546	306	207	131

ISSN: 1743-422X