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Table 5 Sequence results compared to reference sequences

From: E6 and E7 gene polymorphisms in human papillomavirus Type-6 identified in Southwest China

Sequence HPV6 E6 HPV6 E7
  40 55 120 150 159 222 264 279 291 372 378 10 11 100 155 156 262 294
Reference G A A C C A A T C G C A G G T C A C
HPV6vc T . T G . T T . T A . G A A A . . A
KU298876 . . T G . C T . T A T . . . . . G A
HE599232 . . T G . T T . T A . . . . A . . A
FR751328 . T T G . C T . T A . . . . . . . A
FR751337 . . T G . T T . T A . . . . A . . A
AF092932 . . T G . T T . T A . . . . A . . A
L41216 . . T G . C T . T . T . . . . . G A
JN252318 . T T G T C T G T A . . . . . T . A
Reference AA D T   H         R E F   D  
AA position 14 19   50         4 34 52   88  
AA mutations Y S   Q         E K K   N  
  1. Note: The nucleotides conserved with respect to the reference sequence were marked with a dash (.), whereas a variation position was indicated by a letter. The numbers in the second row of the table mean nucleotide positions. “HPV6vc” includes all mutations of the sequenced samples. AA means amino acid