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Table 5 Sequence results compared to reference sequences

From: E6 and E7 gene polymorphisms in human papillomavirus Type-6 identified in Southwest China

Sequence

HPV6 E6

HPV6 E7

 

40

55

120

150

159

222

264

279

291

372

378

10

11

100

155

156

262

294

Reference

G

A

A

C

C

A

A

T

C

G

C

A

G

G

T

C

A

C

HPV6vc

T

.

T

G

.

T

T

.

T

A

.

G

A

A

A

.

.

A

KU298876

.

.

T

G

.

C

T

.

T

A

T

.

.

.

.

.

G

A

HE599232

.

.

T

G

.

T

T

.

T

A

.

.

.

.

A

.

.

A

FR751328

.

T

T

G

.

C

T

.

T

A

.

.

.

.

.

.

.

A

FR751337

.

.

T

G

.

T

T

.

T

A

.

.

.

.

A

.

.

A

AF092932

.

.

T

G

.

T

T

.

T

A

.

.

.

.

A

.

.

A

L41216

.

.

T

G

.

C

T

.

T

.

T

.

.

.

.

.

G

A

JN252318

.

T

T

G

T

C

T

G

T

A

.

.

.

.

.

T

.

A

Reference AA

D

T

 

H

       

R

E

F

 

D

 

AA position

14

19

 

50

       

4

34

52

 

88

 

AA mutations

Y

S

 

Q

       

E

K

K

 

N

 
  1. Note: The nucleotides conserved with respect to the reference sequence were marked with a dash (.), whereas a variation position was indicated by a letter. The numbers in the second row of the table mean nucleotide positions. “HPV6vc” includes all mutations of the sequenced samples. AA means amino acid
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Virology Journal

ISSN: 1743-422X