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Table 3 Recombination events of S7 and S9 in RBSDV and SRBSDV

From: Close evolutionary relationship between rice black-streaked dwarf virus and southern rice black-streaked dwarf virus based on analysis of their bicistronic RNAs

Event number

Recombination sequence

Breakpoint

Supporting software

Major Parent

Minor Parent

P-value

Begin

End

7–1

HF955011(S7)

1262

1313

RGMCS

HF954991

AY147039

1.456 × 10−9

9–1

AF459812(S9)

16

1472

RGMS

HQ7315000

HF955003

2.390 × 10−10

9–2

AF536564(S9)

16

1472

RGMS

HQ7315000

Unknown (HF955003)

2.390 × 10−10

9–3

AJ291706(S9)

4

1472

RGMS

HQ7315000

Unknown (HF955003)

1.081 × 10− 62

9–4

AY039705(S9)

16

1469

RGMS

HQ731500

Unknown (HF955003)

4.518 × 10−21

9–5

AY050487(S9)

16

1469

RGMS

HQ731500

Unknown (HF955003)

1.081 × 10−62

9–6

HF955013(S9)

16

1469

RGMCS

HQ731500

Unknown (HF955003)

2.673 × 10−9

9–7

HQ731500(S9)

82

1184

RGBMS

Unknown (HM998852)

HF955003

1.011 × 10−14

9–8

KC134297(S9)

4

1472

RGMS

HQ731500

Unknown (HF955003)

7.524 × 10−14

9–9

KM921681(S9)

4

1469

RGBMS

HQ731500

Unknown (HF955003)

4.625 × 10−19

  1. Note: R, RDP; G, GENECONV; M, MAXCHI; C, CHIMAERA; S, SISCAN; B, BOOTSCAN