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Table 3 Recombination events of S7 and S9 in RBSDV and SRBSDV

From: Close evolutionary relationship between rice black-streaked dwarf virus and southern rice black-streaked dwarf virus based on analysis of their bicistronic RNAs

Event number Recombination sequence Breakpoint Supporting software Major Parent Minor Parent P-value
Begin End
7–1 HF955011(S7) 1262 1313 RGMCS HF954991 AY147039 1.456 × 10−9
9–1 AF459812(S9) 16 1472 RGMS HQ7315000 HF955003 2.390 × 10−10
9–2 AF536564(S9) 16 1472 RGMS HQ7315000 Unknown (HF955003) 2.390 × 10−10
9–3 AJ291706(S9) 4 1472 RGMS HQ7315000 Unknown (HF955003) 1.081 × 10− 62
9–4 AY039705(S9) 16 1469 RGMS HQ731500 Unknown (HF955003) 4.518 × 10−21
9–5 AY050487(S9) 16 1469 RGMS HQ731500 Unknown (HF955003) 1.081 × 10−62
9–6 HF955013(S9) 16 1469 RGMCS HQ731500 Unknown (HF955003) 2.673 × 10−9
9–7 HQ731500(S9) 82 1184 RGBMS Unknown (HM998852) HF955003 1.011 × 10−14
9–8 KC134297(S9) 4 1472 RGMS HQ731500 Unknown (HF955003) 7.524 × 10−14
9–9 KM921681(S9) 4 1469 RGBMS HQ731500 Unknown (HF955003) 4.625 × 10−19
  1. Note: R, RDP; G, GENECONV; M, MAXCHI; C, CHIMAERA; S, SISCAN; B, BOOTSCAN