Skip to main content

Advertisement

Table 2 Nucleotide and amino acid sequence differences between the complete genome sequences of VHSV strains MI03 and DK-3592B

From: The glycoprotein, non-virion protein, and polymerase of viral hemorrhagic septicemia virus are not determinants of host-specific virulence in rainbow trout

Genomic region # nt diffs/ total # nt, (%) Deletions in DK-3592B relative to MI03 # aa diffs/ total # aa, (%)
3′ leader 2/53, (3.77%)   
N gene 5’UTR 6/111, (5.40%)   
N gene ORF 134/1212, (11.06%)   29/404, (7.18%)
N gene 3′ UTR 30/60, (50.0%) 20 nt  
N-P intergenic 0/2 (CG)   
P gene 5’UTR 7/57, (12.28%) 1 nt  
P gene ORF 98/666, (14.71%)   15/222, (6.76%)
P gene 3′ UTR 6/34, (17.65%)   
P-M intergenic 0/2 (CG)   
M gene 5’UTR 13/81, (16.05%)   
M gene ORF 68/603, (11.28%)   9/201, (4.48%)
M gene 3′ UTR 12/54, (22.22%) 1 nt  
M-G intergenic 0/2 (TG)   
G gene 5’UTR 7/33, (21.21%)   
G gene ORF 205/1521, (13.48%)   37/507, (7.30%)
G gene 3′ UTR 12/51, (23.53%)   
G-NV intergenic 0/2 (TG)   
NV gene 5’UTR 6/21, (28.57%)   
NV gene ORF 79/366, (21.58%)   32/122, (26.23%)
NV gene 3′ UTR 6/31, (19.35%)   
NV-L intergenic 0/2 (TG)   
L gene 5’UTR 11/94, (11.70%)   
L gene ORF 760/5952, (12.77%)   66/1984, (3.33%)
L gene 3′ UTR 9/38, (23.68%) 2 nt  
5′ trailer 23/116 (19.83%) 1 nt  
Full Genome 1489/11184 (13.31%) 25 nt total