Table 2 Nucleotide and amino acid sequence differences between the complete genome sequences of VHSV strains MI03 and DK-3592B
|
Genomic region |
# nt diffs/ total # nt, (%) |
Deletions in DK-3592B relative to MI03 |
# aa diffs/ total # aa, (%) |
|---|---|---|---|
| 3′ leader | 2/53, (3.77%) | ||
| N gene 5’UTR | 6/111, (5.40%) | ||
| N gene ORF | 134/1212, (11.06%) | 29/404, (7.18%) | |
| N gene 3′ UTR | 30/60, (50.0%) | 20 nt | |
| N-P intergenic | 0/2 (CG) | ||
| P gene 5’UTR | 7/57, (12.28%) | 1 nt | |
| P gene ORF | 98/666, (14.71%) | 15/222, (6.76%) | |
| P gene 3′ UTR | 6/34, (17.65%) | ||
| P-M intergenic | 0/2 (CG) | ||
| M gene 5’UTR | 13/81, (16.05%) | ||
| M gene ORF | 68/603, (11.28%) | 9/201, (4.48%) | |
| M gene 3′ UTR | 12/54, (22.22%) | 1 nt | |
| M-G intergenic | 0/2 (TG) | ||
| G gene 5’UTR | 7/33, (21.21%) | ||
| G gene ORF | 205/1521, (13.48%) | 37/507, (7.30%) | |
| G gene 3′ UTR | 12/51, (23.53%) | ||
| G-NV intergenic | 0/2 (TG) | ||
| NV gene 5’UTR | 6/21, (28.57%) | ||
| NV gene ORF | 79/366, (21.58%) | 32/122, (26.23%) | |
| NV gene 3′ UTR | 6/31, (19.35%) | ||
| NV-L intergenic | 0/2 (TG) | ||
| L gene 5’UTR | 11/94, (11.70%) | ||
| L gene ORF | 760/5952, (12.77%) | 66/1984, (3.33%) | |
| L gene 3′ UTR | 9/38, (23.68%) | 2 nt | |
| 5′ trailer | 23/116 (19.83%) | 1 nt | |
| Full Genome | 1489/11184 (13.31%) | 25 nt total |