Table 3 Untyped HPV strains detected by FAP59/64 primers
Patient code | Closest strain | GenBank accession number | Nucleotide sequence similarity(%) | ||
|---|---|---|---|---|---|
HIV positive | Anal swabs | Q654 | Isolate SE17 | JF906538.1 | 97% |
Q760 | Isolate FA79 | AF455142.1 | 99% | ||
Q763 | Isolate FAIMVS9 | AF489714.1 | 99% | ||
Q1539 | Mixeda | ||||
Q2164 Q1354 | Isolate FA39 MM7 | AF217684.1 KC869667 | 97% 98% | ||
Oral Swabs | Q337 | Isolate SE80 | JX316020.1 | 91% | |
Q656 | Isolate FA97 | AF542103.1 | 97% | ||
Q1017 | Mixeda | ||||
Q1234 | Isolate SE435 | KP6922119.1 | 99% | ||
Q1644 Q1766 | Isolate FA12.2 Isolate FA12.2 | AY502596.1 AY502596.1 | 99% 99% | ||
HIV negative | Q127 | Isolate FA130 | AY468427.1 | 99% |