Table 1 HPV-58 variants based on the LCR/E6/E7 sequences
From: The polymorphisms of LCR, E6, and E7 of HPV-58 isolates in Yunnan, Southwest China
HPV-58 variable sites | |||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GenBank Acession | Variant ID | LCR | E6 | E7 | Lineage | ||||||||||||||||||||||||
7172 | 7194 | 7265 | 7266 | 7304 | 7440 | 7525 | 7540 | 7556 | 7714 | 7749 | 7755 | 7784 | 7793 | 7807 | 24 | 52 | 54 | 307 | 321 | 388 | 632 | 694 | 744 | 760 | 761 | 803 | |||
D90400.1 | T | G | C | C | A | T | A | A | C | A | C | A | T | A | T | T | C | G | C | C | A | C | G | T | G | G | T | A1 | |
MF741321 | 1 | – | – | – | – | – | G | – | – | – | – | – | – | – | – | – | – | – | A | – | – | – | – | – | – | – | – | – | A1 |
MF741322 | 2 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | A1 |
MF741323 | 3 | – | – | – | – | – | – | – | – | – | – | – | – | – | G | – | – | – | – | – | – | C | – | – | G | – | – | C | A1 |
MF741324 | 4 | – | – | – | – | – | – | – | G | – | – | G | – | C | – | – | – | – | – | – | – | – | – | – | – | – | – | – | A1 |
MF741325 | 5 | – | – | G | T | – | – | – | – | – | G | – | – | – | – | – | – | – | – | T | – | – | – | A | G | – | A | – | A2 |
MF741326 | 6 | – | – | G | T | – | – | – | – | – | – | – | – | – | G | – | – | – | – | – | T | C | – | – | G | – | – | C | A1 |
MF741327 | 7 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | A1 |
MF741328 | 8 | C | – | G | T | – | – | – | – | – | G | – | – | – | – | G | – | – | – | T | – | – | – | A | G | – | A | – | A2 |
MF741329 | 9 | – | C | – | – | G | – | C | – | T | C | – | G | – | C | – | – | T | – | T | – | – | T | – | G | A | – | – | A3 |
MF741330 | 10 | – | C | – | – | G | – | – | – | – | C | – | G | – | – | – | – | T | – | T | – | – | T | – | G | A | – | – | A3 |
MF741331 | 11 | – | – | – | – | – | – | – | – | – | – | – | – | – | G | – | G | – | – | – | – | C | – | – | G | – | – | C | A1 |
AA changes | C66C | S71F | K93 N | T20I | G41R | T57 T | G63S | G63D | V77A | ||||||||||||||||||||
Secondary structure | H | S | H | ||||||||||||||||||||||||||