Human papillomavirus detection using the Abbott RealTime high-risk HPV tests compared with conventional nested PCR coupled to high-throughput sequencing of amplification products in cervical smear specimens from a Gabonese female population

Table 3 Concordance between genotypes generated by conventional nested PCR (PCR GP) and the Abbott RealTime assay (AbRT) (P, positive; N, negative; hrHPV, high-risk HPV, a category including 12 different hrHPV genotypes)

Case number	PCR GP -HPV16	AbRT - HPV16	PCR GP -HPV18	AbRT - HPV18	PCR GP –hrHPV	AbRT - hrHPV	Cytology
1	P	P	N	N	N	N	carcinoma
2	P	P	N	N	N	N	carcinoma
3	P	P	N	N	N	N	carcinoma
4	P	P	N	N	N	N	carcinoma
5	P	P	N	N	N	N	carcinoma
6	P	P	N	N	N	N	HSIL
7	P	P	N	N	N	N	HSIL
8	P	P	N	N	N	N	HSIL
9	P	P	P	N	33	N	HSIL
10	P	P	N	N	33	P	HSIL
11	P	N	P	P	N	N	carcinoma
12	P	N	N	N	45	P	carcinoma
13	N	N	P	P	N	N	HSIL
14	N	N	P	N	33	P	HSIL
15	P	P	N	N	N	N	LSIL
16	P	P	N	N	N	N	LSIL
17	P	P	N	N	58	P	LSIL
18	P	P	N	N	N	N	LSIL
19	P	N	N	N	N	N	LSIL
20	P	N	N	N	33/32	N	LSIL
21	P	N	N	N	N	P	LSIL
22	P	N	N	N	N	P	LSIL
23	N	N	P	P	N	N	LSIL
24	N	N	P	P	N	N	LSIL
25	N	N	P	P	N	N	LSIL
26	N	N	N	N	33	P	LSIL
27	N	N	P	N	N	N	LSIL
28	P	N	N	N	31	N	normal
29	P	N	N	N	33	N	normal
30	N	N	N	N	33	P	normal
31	P	N	N	N	33	P	normal
32	N	N	N	N	35	P	normal
33	P	N	P	P	45	N	normal
34	N	N	N	N	58	N	normal
35	P	P	P	N	72	P	normal
36	P	N	P	N	33/35/45/58/72	N	normal
37	P	N	P	N	33/45/58/72	N	normal
38	P	N	N	N	33/45/72/81	P	normal
39	P	N	N	N	33/58	N	normal
40	P	P	P	P	33/72	P	normal
41	N	N	N	N	35/72	N	normal
42	P	N	N	N	45/72	P	normal
43	P	N	N	N	N	N	normal

ISSN: 1743-422X