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Table 3 Concordance between genotypes generated by conventional nested PCR (PCR GP) and the Abbott RealTime assay (AbRT) (P, positive; N, negative; hrHPV, high-risk HPV, a category including 12 different hrHPV genotypes)

From: Human papillomavirus detection using the Abbott RealTime high-risk HPV tests compared with conventional nested PCR coupled to high-throughput sequencing of amplification products in cervical smear specimens from a Gabonese female population

Case number PCR GP -HPV16 AbRT - HPV16 PCR GP -HPV18 AbRT - HPV18 PCR GP –hrHPV AbRT - hrHPV Cytology
1 P P N N N N carcinoma
2 P P N N N N carcinoma
3 P P N N N N carcinoma
4 P P N N N N carcinoma
5 P P N N N N carcinoma
6 P P N N N N HSIL
7 P P N N N N HSIL
8 P P N N N N HSIL
9 P P P N 33 N HSIL
10 P P N N 33 P HSIL
11 P N P P N N carcinoma
12 P N N N 45 P carcinoma
13 N N P P N N HSIL
14 N N P N 33 P HSIL
15 P P N N N N LSIL
16 P P N N N N LSIL
17 P P N N 58 P LSIL
18 P P N N N N LSIL
19 P N N N N N LSIL
20 P N N N 33/32 N LSIL
21 P N N N N P LSIL
22 P N N N N P LSIL
23 N N P P N N LSIL
24 N N P P N N LSIL
25 N N P P N N LSIL
26 N N N N 33 P LSIL
27 N N P N N N LSIL
28 P N N N 31 N normal
29 P N N N 33 N normal
30 N N N N 33 P normal
31 P N N N 33 P normal
32 N N N N 35 P normal
33 P N P P 45 N normal
34 N N N N 58 N normal
35 P P P N 72 P normal
36 P N P N 33/35/45/58/72 N normal
37 P N P N 33/45/58/72 N normal
38 P N N N 33/45/72/81 P normal
39 P N N N 33/58 N normal
40 P P P P 33/72 P normal
41 N N N N 35/72 N normal
42 P N N N 45/72 P normal
43 P N N N N N normal