The genetic structure of Turnip mosaic virus population reveals the rapid expansion of a new emergent lineage in China

Table 1 Recombination sites and possible parent-like isolates

Isolate	Major parent	Minor parent	B-E	Software*	P-value	Z-value^#
CHBJ1	WF1–04	WF7–06	15–1051	GBS3	2.07 × 10⁻¹⁸	9.7
CHBJ2	WF1–04	WF7–06	15–1051	GBS3	2.07 × 10⁻¹⁸	9.65
CHK16	WF-05	R4	17–387	BMCS3	1.028 × 10⁻¹⁴	9.43
CHK51	WF-05	R4	17–387	BMCS3	1.028 × 10⁻¹⁴	9.38
R	WF-05	R4	17–697	MCS3	1.028 × 10⁻¹⁴	8.92
R5	WF-05	R4	17–451	MCS3	1.028 × 10⁻¹⁴	10.6
WF2–06	WF1–04	WF7–06	15–1051	GBS3	2.07 × 10⁻¹⁸	10.2
WF3–06	WF1–04	WF7–06	10–1051	GBS3	2.07 × 10⁻¹⁸	10.2
WF3–07	WF1–04	WF7–06	10–1047	GBS3	2.07 × 10⁻¹⁸	10.2
WF8–08	WF1–04	WF7–06	10–1051	GBS3	2.07 × 10⁻¹⁸	10.1
WF10–07	TA15–08	WF3–08	91–786	MCS3	1.18 × 10⁻⁸	7.1
WFLB3	WF7–06	WF1–04	377–657	GBS3	2.07 × 10⁻¹⁸	10.6

The recombination crossover sites within CP-UTR of turnip mosaic virus were detected by the recombination detecting programs. The geographical origin of each isolate were showed in Fig. 2
*The programs supporting recombination event. R(RDP), G (Geneconv), B (Bootscan), M (Maxchi), C (Chimaera), S (Siscan) and 3 (3seq). The analysis was carried out with default settings for the different detection methods and a Bonferroni-corrected cutoff of 0.05. The program that has the greatest P-value was marked in bold. B-E represents the beginning and ending point of recombination

ISSN: 1743-422X