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Table 3 Characteristics of the full genome sequences of the new Mastrevirus isolates recovered from plants collected in Florida and Guadeloupe

From: Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Réunion

GenBank accession # Strain Isolate Host Original source Sampling location Collection date Sequence length (nt) Restriction/primers
KX352041 D FL_30-1 Saccharum spontaneum (Iranspon) Iran USA (Florida) 30 Sept. 2014 2747 PstI
KX352042 D FL_30-2 Saccharum spontaneum (Iranspon) Iran USA (Florida) 30 Sept. 2014 2747 PstI
KX352044 D FL_434-2 Saccharum spontaneum (Iranspon) Iran USA (Florida) 30 Sept. 2014 2743 PstI
KX352047 D FL_897-1 Saccharum spontaneum (Iranspon) Iran USA (Florida) 30 Sept. 2014 2742 PstI
KX352045 C FL_579-1 Saccharum barberi (Ketari) India USA (Florida) 30 Sept. 2014 2740 BamHI
KX352046 C FL_579-2 Saccharum barberi (Ketari) India USA (Florida) 30 Sept. 2014 2746 BamHI
KX352040 C FL_579-3 Saccharum barberi (Ketari) India USA (Florida) 30 Sept. 2014 2738 BamHI
KX352043 B FL_362-1 Saccharum officinarum (NG28-020) New Guinea USA (Florida) 30 Sept. 2014 2749 BamHI
KX352048 A GP_EK2-1 Saccharum officinarum (EK2) Indonesia Guadeloupe 11 Dec. 2013 2747 F-5′-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’
KX352056 A GP_EK2-2 Saccharum officinarum (EK2) Indonesia Guadeloupe 11 Dec. 2013 2741 F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’
KX352049 A GP_EK2-3 Saccharum officinarum (EK2) Indonesia Guadeloupe 11 Dec. 2013 2747 F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’
KX352050 A GP_EK2-4 Saccharum officinarum (EK2) Indonesia Guadeloupe 11 Dec. 2013 2747 F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’
KX352054 A GP_TC3-1 Sugarcane (TC3) Malaysia Guadeloupe 11 Dec. 2013 2749 F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’
KX352055 A GP_TC3-2 Sugarcane (TC3) Malaysia Guadeloupe 11 Dec. 2013 2749 F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’
KX352051 A GP_TC9-1 Sugarcane (TC9) Malaysia Guadeloupe 11 Dec. 2013 2747 F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’
KX352052 A GP_TC9-2 Sugarcane (TC9) Malaysia Guadeloupe 11 Dec. 2013 2747 F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’
KX352053 A GP_TC9-3 Sugarcane (TC9) Malaysia Guadeloupe 11 Dec. 2013 2747 F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’
  1. Isolates that differ only by the last number originated from the same host plant; isolates selected for phylogenetic analyses are in bold