Table 3 Characteristics of the full genome sequences of the new Mastrevirus isolates recovered from plants collected in Florida and Guadeloupe
GenBank accession # | Strain | Isolate | Host | Original source | Sampling location | Collection date | Sequence length (nt) | Restriction/primers |
|---|---|---|---|---|---|---|---|---|
KX352041 | D | FL_30-1 | Saccharum spontaneum (Iranspon) | Iran | USA (Florida) | 30 Sept. 2014 | 2747 | PstI |
KX352042 | D | FL_30-2 | Saccharum spontaneum (Iranspon) | Iran | USA (Florida) | 30 Sept. 2014 | 2747 | PstI |
KX352044 | D | FL_434-2 | Saccharum spontaneum (Iranspon) | Iran | USA (Florida) | 30 Sept. 2014 | 2743 | PstI |
KX352047 | D | FL_897-1 | Saccharum spontaneum (Iranspon) | Iran | USA (Florida) | 30 Sept. 2014 | 2742 | PstI |
KX352045 | C | FL_579-1 | Saccharum barberi (Ketari) | India | USA (Florida) | 30 Sept. 2014 | 2740 | BamHI |
KX352046 | C | FL_579-2 | Saccharum barberi (Ketari) | India | USA (Florida) | 30 Sept. 2014 | 2746 | BamHI |
KX352040 | C | FL_579-3 | Saccharum barberi (Ketari) | India | USA (Florida) | 30 Sept. 2014 | 2738 | BamHI |
KX352043 | B | FL_362-1 | Saccharum officinarum (NG28-020) | New Guinea | USA (Florida) | 30 Sept. 2014 | 2749 | BamHI |
KX352048 | A | GP_EK2-1 | Saccharum officinarum (EK2) | Indonesia | Guadeloupe | 11 Dec. 2013 | 2747 | F-5′-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’ |
KX352056 | A | GP_EK2-2 | Saccharum officinarum (EK2) | Indonesia | Guadeloupe | 11 Dec. 2013 | 2741 | F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’ |
KX352049 | A | GP_EK2-3 | Saccharum officinarum (EK2) | Indonesia | Guadeloupe | 11 Dec. 2013 | 2747 | F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’ |
KX352050 | A | GP_EK2-4 | Saccharum officinarum (EK2) | Indonesia | Guadeloupe | 11 Dec. 2013 | 2747 | F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’ |
KX352054 | A | GP_TC3-1 | Sugarcane (TC3) | Malaysia | Guadeloupe | 11 Dec. 2013 | 2749 | F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’ |
KX352055 | A | GP_TC3-2 | Sugarcane (TC3) | Malaysia | Guadeloupe | 11 Dec. 2013 | 2749 | F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’ |
KX352051 | A | GP_TC9-1 | Sugarcane (TC9) | Malaysia | Guadeloupe | 11 Dec. 2013 | 2747 | F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’ |
KX352052 | A | GP_TC9-2 | Sugarcane (TC9) | Malaysia | Guadeloupe | 11 Dec. 2013 | 2747 | F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’ |
KX352053 | A | GP_TC9-3 | Sugarcane (TC9) | Malaysia | Guadeloupe | 11 Dec. 2013 | 2747 | F-5’-CCGAACTGAATGGAAAAATACAACCGGAGG-3′ R-5′-ACCCCCAGACGCTTCACGAACTTC-3’ |