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Table 1 Codon usage in BCoV, displayed as RSCUa values

From: Genome-wide analysis of codon usage bias in Bovine Coronavirus

AA

Cod

BT

NS

ST

Full

AA

Cod

BT

NS

ST

Full

Phe

UUU

0.84

1.78

1.68

1.76

Ser

UCU

1.03

2.00

1.92

1.98

 

UUC

1.15

0.22

0.32

0.24

 

UCC

1.37

0.37

0.50

0.41

Leu

UUA

0.37

1.48

1.39

1.46

 

UCA

0.78

0.84

0.90

0.86

 

UUG

0.71

2.09

1.62

1.98

 

UCG

0.39

0.14

0.26

0.18

 

CUU

0.70

1.46

1.48

1.46

Pro

CCU

1.07

2.18

1.68

2.01

 

CUC

1.25

0.22

0.47

0.28

 

CCC

1.39

0.38

0.82

0.53

 

CUA

0.36

0.36

0.57

0.41

 

CCA

0.99

1.23

1.19

1.22

 

CUG

2.58

0.39

0.48

0.42

 

CCG

0.53

0.21

0.31

0.24

Ile

AUU

0.98

1.78

1.66

1.74

Thr

ACU

0.88

1.91

2.21

2.00

 

AUC

1.56

0.27

0.37

0.30

 

ACC

1.55

0.51

0.63

0.54

 

AUA

0.45

0.95

0.97

0.96

 

ACA

1.00

1.32

0.93

1.20

Met

AUG

1.00

1.00

1.00

1.00

 

ACG

0.55

0.26

0.24

0.25

Val

GUU

0.64

2.24

2.20

2.23

Ala

GCU

1.00

2.12

2.07

2.11

 

GUC

1.00

0.28

0.44

0.32

 

GCC

1.71

0.57

0.54

0.56

 

GUA

0.39

0.63

0.75

0.65

 

GCA

0.80

1.13

1.12

1.13

 

GUG

1.95

0.85

0.62

0.80

 

GCG

0.48

0.18

0.27

0.20

Tyr

UAU

0.78

1.63

1.57

1.61

Cys

UGU

0.83

1.55

1.54

1.55

 

UAC

1.21

0.37

0.43

0.39

 

UGC

1.13

0.45

0.46

0.45

TER

UAA

**

**

**

**

TER

UGA

**

**

**

**

 

UAG

**

**

**

**

Trp

UGG

1.00

1.00

1.00

1.00

His

CAU

0.75

1.56

1.56

1.56

Arg

CGU

0.48

2.17

1.56

2.01

 

CAC

1.24

0.44

0.44

0.44

 

CGC

1.17

0.79

0.47

0.70

Gln

CAA

0.46

1.02

1.16

1.06

 

CGA

0.67

0.44

0.39

0.43

 

CAG

1.53

0.98

0.84

0.94

 

CGG

1.32

0.32

0.27

0.31

Asn

AAU

0.81

1.65

1.70

1.67

Ser

AGU

0.87

2.09

1.71

1.98

 

AAC

1.18

0.35

0.30

0.33

 

AGC

1.53

0.56

0.71

0.61

Lys

AAA

0.78

1.02

0.93

1.00

Arg

AGA

1.13

1.68

2.03

1.77

 

AAG

1.21

0.98

1.07

1.00

 

AGG

1.20

0.59

1.29

0.78

Asp

GAU

0.84

1.70

1.40

1.64

Gly

GGU

0.63

2.50

2.46

2.49

 

GAC

1.15

0.30

0.60

0.36

 

GGC

1.43

0.58

0.60

0.59

Glu

GAA

0.78

1.17

1.09

1.16

 

GGA

0.95

0.64

0.63

0.64

 

GAG

1.21

0.83

0.91

0.84

 

GGG

0.98

0.28

0.30

0.28

  1. a RSCU relative synonymous codon usage, AA amino acid, Cod codons, BT Bos taurus cells, NS non structural genome region, ST structural genome region, Full complete genome coding regions. **, termination codons. Highly increased codons with respect to B. taurus cells (∆ ≥ 0.30) are shown in italics. Highly decreased codons with respect to B. taurus cells are shown in bold
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Virology Journal

ISSN: 1743-422X