Skip to main content

Table 2 Percentage identity matrices (nucleotide and deduced amino acid) of VP6 gene

From: First study conducted in Northern India that identifies group C rotavirus as the etiological agent of severe diarrhea in children in Delhi

Strain Human Bovine Porcine Human/India Study Samples
  Bristol BCN9 OH567 Wu82 BS347 Jajeri Toyama RVC V460 V508 ND-056 ND-061 ND-204 ND-237 ND-240 ND-398
Bristol   92.10% 96.90% 92.10% 96.90% 92.40% 79.00% 79.30% 92.40% 92.10% 99.00% 99.00% 98.70% 99.00% 98.70% 98.70%
BCN9 97.80%   92.70% 97.60% 93.20% 98.50% 84.80% 84.20% 99.10% 98.80% 96.70% 96.70% 97.70% 96.70% 97.70% 97.70%
OH567 92.10% 90.60%   93.80% 97.50% 93.00% 78.70% 79.30% 93.50% 92.70% 95.30% 95.30% 96.30% 95.30% 96.30% 96.30%
Wu82 96.70% 93.30% 94.20%   92.10% 97.90% 84.50% 84.50% 98.50% 97.60% 95.30% 95.30% 97.10% 95.30% 97.10% 97.10%
BS347 91.10% 90.50% 93.00% 97.60%   93.00% 79.80% 79.80% 93.50% 93.20% 96.90% 96.90% 96.90% 96.90% 96.90% 96.90%
Jajeri 92.60% 95.20% 90.40% 94.20% 92.50%   84.80% 84.80% 98.80% 98.50% 98.60% 98.60% 99.70% 98.60% 99.70% 99.70%
Toyama 68.60% 67.10% 62.30% 66.10% 61.40% 66.10%   88.90% 84.80% 85.10% 77.00% 77.00% 78.70% 77.00% 78.70% 78.70%
RVC 66.60% 67.10% 60.40% 64.20% 61.40% 66.10% 88.00%   84.80% 83.90% 77.00% 77.00% 78.70% 77.00% 78.70% 78.70%
V460 95.30% 94.80% 95.30% 92.90% 91.10% 95.30% 64.80% 64.80%   99.10% 90.90% 90.90% 93.00% 90.90% 93.00% 93.00%
V508 96.20% 92.00% 96.20% 91.60% 95.80% 93.50% 63.50% 61.60% 92.90%   90.60% 90.60% 92.70% 90.60% 92.70% 92.70%
ND-056 96.20% 95.10% 96.00% 95.70% 96.20% 97.60% 67.60% 66.60% 96.40% 95.10%   100.00% 98.60% 100.00% 98.60% 98.60%
ND-061 96.20% 95.10% 96.00% 95.70% 96.20% 97.60% 67.60% 66.60% 96.40% 95.10% 100.00%   98.60% 100.00% 98.60% 98.60%
ND-204 95.40% 93.20% 93.20% 95.30% 92.10% 96.40% 61.40% 60.20% 95.20% 96.60% 97.20% 97.20%   97.20% 100.00% 100.00%
ND-237 96.20% 95.10% 96.00% 95.70% 96.20% 97.60% 67.60% 66.60% 96.40% 95.10% 100.00% 100.00% 98.60%   98.60% 97.20%
ND-240 95.40% 93.20% 93.20% 95.30% 92.10% 96.40% 61.40% 60.20% 95.20% 96.60% 97.20% 97.20% 100.00% 97.20%   100.00%
ND-398 95.40% 93.20% 93.20% 95.30% 92.10% 96.40% 61.40% 60.20% 95.20% 96.60% 97.20% 97.20% 100.00% 97.20% 100.00%  
  1. Identity matrices of the nucleotide (above the diagonal) and deduced amino acid (below the diagonal) among human, porcine and bovine group C rotavirus strains. Reference strains from different geographical locations are used in the analysis
Back to article page

Virology Journal

ISSN: 1743-422X