Table 2 Gene similarities of AcCoV-JC34 and representative Alpha- and Beta-CoVs with full-length genome
From: Detection of alpha- and betacoronaviruses in rodents from Yunnan, China
Viruses | Genome | Pairwise amino acid sequence identity between JC34 and other virus sequences (%) | |||||||
|---|---|---|---|---|---|---|---|---|---|
Size (nt) | G + C content(%) | 3CLpro | RdRp | Hel | S | E | M | N | |
Alphacoronavirus | |||||||||
 RatCoV-JC34 | 27,649 | 40.07 | - | - | - | - | - | - | - |
 BatCoV 1A | 28,326 | 38.14 | 57 | 76.6 | 74 | 17.6 | 36.5 | 50.2 | 23.3 |
 BatCoV HKU2 | 27,164 | 39.32 | 58.5 | 75.1 | 73.3 | 39.2 | 36 | 53.5 | 27.9 |
 BatCoV HKU8 | 28,773 | 41.79 | 61.2 | 76.5 | 73.5 | 18.6 | 33.8 | 51 | 23.5 |
 RatCoV LRNV# | 28,763 | 40.29 | 91.9 | 94.3 | 96 | 67.2 | 93.8 | 92.3 | 78 |
 BatCoV 512 | 28,203 | 40.12 | 60.9 | 73.3 | 71.8 | 18.3 | 35.5 | 53.1 | 24.6 |
 PEDV | 28,033 | 42.02 | 59.7 | 74.3 | 72 | 17 | 34.2 | 52.7 | 23.2 |
 HCoV-NL63 | 27,553 | 34.46 | 59.8 | 73.9 | 73 | 17.2 | 35.1 | 50.8 | 24 |
 HCoV-229E | 27,317 | 34.46 | 58.9 | 73.3 | 74.3 | 19 | 36.4 | 46.3 | 21.7 |
 MiCoV | 28,941 | 37.47 | 59.7 | 77.9 | 73 | 17.5 | 40.7 | 53.2 | 25.9 |
 FCoV | 29,277 | 38.34 | 57.8 | 75.3 | 71.4 | 16.8 | 42 | 55.6 | 24.7 |
 CCoV | 29,380 | 37.56 | 58.1 | 76.4 | 71.9 | 16.9 | 40.7 | 57.3 | 25.6 |
 TGEV | 28,586 | 37.6 | 58.5 | 76.5 | 71.9 | 17.3 | 37 | 56.9 | 26.1 |
Betacoronavirus lineage A | |||||||||
 Betacoronavirus 1 | |||||||||
  HCoV-OC43 | 30,741 | 36.69 | 44.1 | 55.8 | 59.1 | 21.8 | 17.6 | 37.4 | 21 |
  PHEV | 30,480 | 37.25 | 44.1 | 55.9 | 59.1 | 21.4 | 18.8 | 37.4 | 20.9 |
 BCoV | 31,032 | 37.02 | 44.4 | 55.7 | 59.5 | 22.1 | 18.8 | 38.7 | 21.4 |
 ECoV | 30,992 | 37.23 | 44.4 | 56 | 59.5 | 21.5 | 17.6 | 37.4 | 21.7 |
 CrCoV | 31,028 | 37.01 | 44.4 | 55.8 | 59.5 | 21.9 | 18.8 | 38.3 | 21.2 |
 Murine coronavirus | |||||||||
  MHV | 31,386 | 41.88 | 42.9 | 55.5 | 57.5 | 21.1 | 18.1 | 36.8 | 21.3 |
 RCoV | 31,250 | 41.26 | 42.9 | 56 | 58.9 | 21 | 20.5 | 38 | 21.3 |
 RatCoV HKU24# | 31,249 | 40.07 | 43.3 | 56 | 60.5 | 21.6 | 20.5 | 39.6 | 21 |
 RatCoV-708#@ | 30,821 | 39.06 | 44.1 | 56 | 58.5 | 20.6 | 20.5 | 36.8 | 20.8 |
 HCoV-HKU1 | 29,926 | 32.06 | 44.8 | 55.8 | 58.3 | 21.2 | 30 | 37.9 | 21.8 |
 RabbitCoV HKU14 | 31,100 | 37.64 | 44.8 | 56 | 59.7 | 21.8 | 17.6 | 38.7 | 21.5 |
Betacoronavirus lineage B | |||||||||
 SARS-CoV | 29,727 | 40.80 | 43 | 58.9 | 60.8 | 22.1 | 19 | 27 | 19.4 |
Betacoronavirus lineage C | |||||||||
 MERS-CoV | 30,112 | 41.18 | 40.9 | 58.7 | 63.6 | 21.2 | 19.3 | 34.8 | 18.6 |
Betacoronavirus lineage D | |||||||||
 BatCoV HKU9 | 29,114 | 41.05 | 39.8 | 57.2 | 62.3 | 22.2 | 17.7 | 29.6 | 16 |