Genomic organization and recombination analysis of a porcine sapovirus identified from a piglet with diarrhea in China

Table 2 Profile of porcine sapovirus isolates used for sequence analyses

Strain ID	GenBank accession number	Length	Geographic origin	Genogroup
VZ	DQ056363	1940 bp	Venezuela	GIII
YiY1/2006	EU381231	1635 bp	China ^b	GIII
OH-MM280/2003	AY823308	2971 bp	USA	GIII
NC-QW270	AY826426	2971 bp	USA	GIII
S20	AB242875	1635 bp	Japan	GIII
HW20/2007	HM346629	2983 bp	South Korea	GIII
DG24/2007	HM346628	3016 bp	South Korea	GIII
ah-1/2009	JX678943	7342 bp	China ^b	GIII
Cowden	AF182760	7320 bp	USA	GIII
LL14	AY425671	7291 bp	USA	GIII
JJ259	KT922089	7347 bp	USA	GIII
sav1/2008	FJ387164	7558 bp	China ^b	GIII
CH430/2012	KF204570	7371 bp	China ^b	GIII
p2^a	KX688107	7371 bp	China ^b	GIII
WG194D-1	KX000383	7496 bp	USA	GV
TYMPo239	AB521771	3949 bp	Japan	GV
TYMPo31	AB521772	3949 bp	Japan	GV
OH-JJ674	KJ508818	7198 bp	USA	GVI
OH-JJ681	AY974192	7198 bp	USA	GVI
RV0042/2011	KX000384	7150 bp	USA	GVII
OH-LL26/2002	AY974195	2952 bp	USA	GVII
K7	AB221130	7144 bp	Japan	GVII
K10	AB221131	2972 bp	Japan	GVII
AB23	FJ498787	3000 bp	Canada	GVII
DO19/2007	HM346630	2983 bp	South Korea	GVII
2014P2	DQ359099	1626 bp	Brazil	GVII
F2-4/2006	GU230161	2935 bp	Canada	GVII
F8-9/2006	GU230162	2926 bp	Canada	GVII
WGP3/2009	KC309420	2933 bp	USA	GVII
WGP247/2009	KC309421	6052 bp	USA	GVII
WG194D/2009	KC309416	6654 bp	USA	GVIII
WG214D/2009	KC309419	7497 bp	USA	GVIII
06-18p3	EU221477	3094 bp	Italy	GVIII
F19-10	FJ498786	3142 bp	Canda	GVIII
WG180B	KC309415	3111 bp	USA	GVIII
WG197C/2009	KC309417	6497 bp	USA	GVIII
WG214C	KC309418	3695 bp	USA	GIX
F16-7	FJ498788	2982 bp	Canada	GIX
K8	AB242873	1617 bp	Japan	GX
2053P4	DQ359100	1635 bp	Brazil	GXI

^aThe strain with complete genomic sequence determined in this study
^bThe strains which were deposited in GenBank database by Chinese researchers and used in this study were bolded

ISSN: 1743-422X