Table 5 Sequence identity matrix for CDS of HN gene of thermostable ND-viruses and vaccine strains
SEQUENCE | LASOTAC5 | TZ | D58 | MU001 | MU007 | MU010 | MU022 | MU039 | MU059 | MU098 | MU111 | LASOTA | I-2 | BEAUDC | C/P/01 | I-2PRO | TS09-C | NDV4C | CLONE30 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LA SOTA C5 | ID | 83.2 | 93.4 | 81.1 | 81.2 | 81.2 | 81.2 | 80.9 | 81.2 | 80.9 | 81.1 | 99.5 | 91.3 | 9.6 | 0.8 | 0.8 | 0.8 | 0.9 | 60.7 |
TZ060107 | 76.2 | ID | 88.0 | 90.8 | 90.7 | 90.5 | 90.7 | 90.5 | 91.0 | 90.8 | 90.8 | 82.8 | 83.2 | 9.4 | 1.5 | 0.7 | 0.7 | 0.8 | 53.0 |
D58 | 93.5 | 81.3 | ID | 85.9 | 86.1 | 86.1 | 86.1 | 85.7 | 86.1 | 85.7 | 85.9 | 93.8 | 87.1 | 10.0 | 0.6 | 0.8 | 0.8 | 0.8 | 60.2 |
NDV/MU001 | 76.4 | 85.8 | 81.4 | ID | 98.5 | 98.4 | 99.1 | 99.2 | 98.9 | 98.7 | 99.2 | 80.9 | 80.7 | 8.2 | 1.5 | 0.7 | 0.7 | 0.8 | 51.5 |
NDV/MU007 | 76.7 | 85.8 | 81.7 | 98.4 | ID | 99.4 | 99.1 | 98.9 | 98.9 | 98.7 | 98.9 | 81.1 | 80.7 | 8.2 | 1.4 | 0.7 | 0.7 | 0.8 | 51.5 |
NDV/MU010 | 76.7 | 85.8 | 81.7 | 98.3 | 99.8 | ID | 98.9 | 98.4 | 98.4 | 98.5 | 98.7 | 81.1 | 80.7 | 8.2 | 1.4 | 0.7 | 0.7 | 0.8 | 51.5 |
NDV/MU022 | 76.4 | 85.8 | 81.4 | 99.2 | 98.8 | 98.7 | ID | 99.1 | 99.1 | 98.9 | 99.4 | 81.1 | 80.7 | 8.4 | 1.4 | 0.7 | 0.7 | 0.8 | 51.5 |
NDV/MU039 | 76.4 | 85.7 | 81.4 | 99.3 | 98.4 | 98.3 | 99.1 | ID | 99.2 | 98.7 | 99.2 | 80.7 | 80.4 | 8.2 | 1.5 | 0.7 | 0.7 | 0.8 | 51.3 |
NDV/MU059 | 76.6 | 85.9 | 81.6 | 99.0 | 98.5 | 98.4 | 99.3 | 99.0 | ID | 98.7 | 99.2 | 81.1 | 80.4 | 8.2 | 1.4 | 0.7 | 0.7 | 0.8 | 51.3 |
NDV/MU098 | 76.4 | 85.8 | 81.4 | 99.0 | 98.6 | 98.4 | 99.3 | 98.9 | 99.0 | ID | 99.1 | 80.7 | 80.7 | 8.2 | 1.4 | 0.7 | 0.7 | 0.8 | 51.5 |
NDV/MU111 | 76.6 | 86.0 | 81.6 | 99.1 | 98.6 | 98.5 | 99.4 | 99.1 | 99.2 | 99.2 | ID | 80.9 | 80.6 | 8.2 | 1.4 | 0.7 | 0.7 | 0.8 | 51.5 |
LASOTA | 99.7 | 76.2 | 93.6 | 76.3 | 76.6 | 76.6 | 76.3 | 76.3 | 76.5 | 76.3 | 76.5 | ID | 90.9 | 9.4 | 0.6 | 0.8 | 0.8 | 0.9 | 60.5 |
I-2 | 87.9 | 78.6 | 82.7 | 77.2 | 77.3 | 77.3 | 77.3 | 77.1 | 77.2 | 77.4 | 77.3 | 87.7 | ID | 10.4 | 1.3 | 0.8 | 0.8 | 0.8 | 56.9 |
BEAUDETTE C | 9.3 | 9.3 | 9.9 | 9.2 | 9.3 | 9.3 | 9.3 | 9.2 | 9.2 | 9.3 | 9.2 | 9.3 | 10.2 | ID | 1.5 | <.001 | <.001 | <.001 | 9.5 |
C/P/0103/01 | 5.2 | 5.7 | 5.5 | 5.5 | 5.5 | 5.5 | 5.4 | 5.5 | 5.5 | 5.4 | 5.5 | 5.1 | 5.2 | 12.9 | ID | 0.2 | 0.12 | 0.2 | 0.8 |
I-2PROGENITOR | 3.0 | 2.8 | 2.8 | 2.8 | 2.8 | 2.8 | 2.8 | 2.8 | 2.8 | 2.8 | 2.8 | 3.0 | 3.0 | 0.2 | 0.6 | ID | 89.0 | 89.2 | 0.8 |
TS09-C | 3.1 | 2.8 | 2.9 | 2.9 | 2.9 | 2.9 | 2.8 | 2.8 | 2.9 | 2.8 | 2.9 | 3.1 | 3.0 | 0.3 | 0.5 | 95.4 | ID | 99.5 | 0.7 |
NDV4-C | 3.1 | 2.8 | 2.9 | 2.9 | 2.9 | 2.9 | 2.9 | 2.9 | 2.9 | 2.9 | 2.9 | 3.1 | 3.0 | 0.3 | 0.5 | 95.5 | 99.8 | ID | 0.8 |
CLONE 30 | 68.5 | 55.0 | 66.8 | 55.1 | 55.2 | 55.2 | 55.0 | 55.1 | 55.1 | 55.2 | 55.2 | 68.5 | 61.4 | 9.0 | 5.0 | 3.2 | 3.1 | 3.1 | ID |