Skip to main content

Table 5 Sequence identity matrix for CDS of HN gene of thermostable ND-viruses and vaccine strains

From: Disparate thermostability profiles and HN gene domains of field isolates of Newcastle disease virus from live bird markets and waterfowl in Uganda

SEQUENCE LASOTAC5 TZ D58 MU001 MU007 MU010 MU022 MU039 MU059 MU098 MU111 LASOTA I-2 BEAUDC C/P/01 I-2PRO TS09-C NDV4C CLONE30
LA SOTA C5 ID 83.2 93.4 81.1 81.2 81.2 81.2 80.9 81.2 80.9 81.1 99.5 91.3 9.6 0.8 0.8 0.8 0.9 60.7
TZ060107 76.2 ID 88.0 90.8 90.7 90.5 90.7 90.5 91.0 90.8 90.8 82.8 83.2 9.4 1.5 0.7 0.7 0.8 53.0
D58 93.5 81.3 ID 85.9 86.1 86.1 86.1 85.7 86.1 85.7 85.9 93.8 87.1 10.0 0.6 0.8 0.8 0.8 60.2
NDV/MU001 76.4 85.8 81.4 ID 98.5 98.4 99.1 99.2 98.9 98.7 99.2 80.9 80.7 8.2 1.5 0.7 0.7 0.8 51.5
NDV/MU007 76.7 85.8 81.7 98.4 ID 99.4 99.1 98.9 98.9 98.7 98.9 81.1 80.7 8.2 1.4 0.7 0.7 0.8 51.5
NDV/MU010 76.7 85.8 81.7 98.3 99.8 ID 98.9 98.4 98.4 98.5 98.7 81.1 80.7 8.2 1.4 0.7 0.7 0.8 51.5
NDV/MU022 76.4 85.8 81.4 99.2 98.8 98.7 ID 99.1 99.1 98.9 99.4 81.1 80.7 8.4 1.4 0.7 0.7 0.8 51.5
NDV/MU039 76.4 85.7 81.4 99.3 98.4 98.3 99.1 ID 99.2 98.7 99.2 80.7 80.4 8.2 1.5 0.7 0.7 0.8 51.3
NDV/MU059 76.6 85.9 81.6 99.0 98.5 98.4 99.3 99.0 ID 98.7 99.2 81.1 80.4 8.2 1.4 0.7 0.7 0.8 51.3
NDV/MU098 76.4 85.8 81.4 99.0 98.6 98.4 99.3 98.9 99.0 ID 99.1 80.7 80.7 8.2 1.4 0.7 0.7 0.8 51.5
NDV/MU111 76.6 86.0 81.6 99.1 98.6 98.5 99.4 99.1 99.2 99.2 ID 80.9 80.6 8.2 1.4 0.7 0.7 0.8 51.5
LASOTA 99.7 76.2 93.6 76.3 76.6 76.6 76.3 76.3 76.5 76.3 76.5 ID 90.9 9.4 0.6 0.8 0.8 0.9 60.5
I-2 87.9 78.6 82.7 77.2 77.3 77.3 77.3 77.1 77.2 77.4 77.3 87.7 ID 10.4 1.3 0.8 0.8 0.8 56.9
BEAUDETTE C 9.3 9.3 9.9 9.2 9.3 9.3 9.3 9.2 9.2 9.3 9.2 9.3 10.2 ID 1.5 <.001 <.001 <.001 9.5
C/P/0103/01 5.2 5.7 5.5 5.5 5.5 5.5 5.4 5.5 5.5 5.4 5.5 5.1 5.2 12.9 ID 0.2 0.12 0.2 0.8
I-2PROGENITOR 3.0 2.8 2.8 2.8 2.8 2.8 2.8 2.8 2.8 2.8 2.8 3.0 3.0 0.2 0.6 ID 89.0 89.2 0.8
TS09-C 3.1 2.8 2.9 2.9 2.9 2.9 2.8 2.8 2.9 2.8 2.9 3.1 3.0 0.3 0.5 95.4 ID 99.5 0.7
NDV4-C 3.1 2.8 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 3.1 3.0 0.3 0.5 95.5 99.8 ID 0.8
CLONE 30 68.5 55.0 66.8 55.1 55.2 55.2 55.0 55.1 55.1 55.2 55.2 68.5 61.4 9.0 5.0 3.2 3.1 3.1 ID
  1. Amino acid differences are indicated in bold and nucleotide differences are in normal font. The difference with commonly used vaccine strains are high lightened