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Table 4 Predicted transmembrane amino acid sequences analysis for HN gene of thermostable ND-viruses and vaccine strains

From: Disparate thermostability profiles and HN gene domains of field isolates of Newcastle disease virus from live bird markets and waterfowl in Uganda

Potential Transmembrane Domains of thermostable field strains and vaccine strains
NDV strain Start End Cutoff Length Predicted amino acid sequence
NDV/UG/MU/007
NDV/UG/MU/010
NDV/UG/MU/022
NDV/UG/MU/039
NDV/UG/MU/059
NDV/UG/MU/111
24 47 1.7 24 VFRIAVLSLIIMILVISVSILVYS
25 46 2.2a 22
96 97 1.7 2 LL
101 105 1.7 5 STIMN
557 563 1.7 7 RIVPLLV
NDV/UG/MU/098 24 47 1.7 24 VFRIAVLSLIIMILVISVSILVYS
25 46 2.2a 22 FRIAVLSLIIMILVISVSILV
96 97 1.7 2 LL
101 104 1.7 4 SVIM
557 563 1.7 7 RIVPLLV
LaSota Thermolabile strain 23 47 1.7 25 IFRIAILFLTVVTLAISVASLLYS
25 45 2.2a 21 FRIAILFLTVVTLAISVASLL
209 210 1.7 2 GV
557 563 1.7 7 TTIMN
I-2 Thermostable strain 23 44 1.7 22 VFRIAILFLTVVTLAVSAAALAYS
25 42 2.2a 18 FRIAILFLTVVTLAVSAAALA
424 429 1.7 6 ALLYPM
557 563 1.7 7 RIVPLLV
NDV4-C Thermostable 24 44 1.7 21 VFRIAILLSTVVTLAISAAAL
25 42 2.2a 18 FRIAILLSTVVTLAISAA
210 210 1.7 1 L
424 430 1.7 7 ALLYMI
557 563 1.7 7 RIVPLLV
NDV TS09-C thermostable 24 44 1.7 21 VFRIAILLSTVVTLAISAAAL
25 42 2.2a 18 FRIAILLSTVVTLAISAA
210 211 1.7 2 VL
424 430 1.7 7 ALLYPMI
557 563 1.7 7 RIVPLLV
NDV B1 strain 24 47 1.7 24 VFRIAILLSTVVTLAISAAALAYS
25 45 2.2a 21 FRIAILLSTVVTLAISAAALA
557 563 1.7 7 RIVPLLV
  1. Sequences in boxes show variation in consensus with avirulent strains. The transmembrane domains marked with (a) were significant and considered to different isolates and vaccinates