Table 2 Putative recombination events in the genomes and individual open reading frames of viruses of RMV cluster of subgroup 3 tobamoviruses
From: Molecular characterisation of a novel recombinant Ribgrass mosaic virus strain FSHS
Parental isolate | Break points | ||||||
|---|---|---|---|---|---|---|---|
Method | Recombinant | Major | Minor | Beginning | Ending | Average P-value | |
Genome | RDP | RMV FSHS | RMV NZ-439 | RMV Actinidia-AC | 1906 | 2564 | 5×10-26 |
GeneConv | ” | ” | ” | 2148 | 2479 | 5×10-10 | |
Bootscan | ” | ” | ” | 1905 | 2564 | 8×10-23 − 5×10-22 | |
MaxChi | ” | ” | ” | 1906 | 2564 | 3×10-17 − 8×10-14 | |
Chimaera | ” | ” | ” | 1926 | 2558 | 1×10-06 − 3×10-05 | |
SciScan | ” | ” | ” | 2148 | 2414 | 1×10-10 − 6×10-10 | |
3Seq | ” | ” | ” | 1926 | 2558 | 2×10-21 − 5×10-06 | |
ORF 1-2 | RDP | RMV FSHS | RMV NZ-439 | RMV Actinidia-AC | 1839−1858 | 2498 | 5×10-23 − 9×10-20 |
GeneConv | ” | ” | ” | 1839 | 2498 | 8×10-11 − 3×10-08 | |
Bootscan | ” | ” | ” | 1839 | 2498 | 3×10-22 − 2×10-18 | |
MaxChi | ” | ” | ” | 1839 | 2498 | 6×10-18 − 3×10-12 | |
Chimaera | ” | ” | ” | 1839 | 2498 | 2×10-16 − 1×10-02 | |
SciScan | ” | ” | ” | 1807−1862 | 2461−2522 | 3×10-11 − 4×10-10 | |
3Seq | ” | ” | ” | 1839 | 2498 | 2×10-22 − 8×10-04 | |
ORF 3 | No recombination | ||||||
ORF 4 | No recombination | ||||||