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Table 2 Sources of pathogens analyzed and H10-RT-LAMP assay results

From: Reverse-transcription, loop-mediated isothermal amplification assay for the sensitive and rapid detection of H10 subtype avian influenza viruses

Number

Virus strain

Source

Titre

H10-RT-LAMP

GenBank accession or laboratory references

1

A/duck/Guangxi/030D/2009 (H1N1)

GVRI

105.5EID50/mL

-

KC608160

2

A/duck/Guangxi/N42/2009 (H3N2)

GVRI

105.4EID50/mL

-

JN003630

3

A/duck/Guangxi/GXd-4/2009 (H6N6)

GVRI

106.8EID50/mL

-

JX304746.1

4

A/turkey/Ontario/6118/1967 (H8N4)

UCONN

106.3EID50/mL

-

GU053171.1

5

A/duck/Guangxi/RX/2009 (H9N2)

GVRI

106.9EID50/mL

-

KF768236.1

6

A/duck/Guangxi/LAD9/2009 (H9N8)

GVRI

107.1EID50/mL

-

KF768214.1

7

A/Turkey/MN/3/1979 (H10N7)

UCONN

106.7EID50/mL

+

GU186627.2

8

A/duck/Alberta/60/1976 (H12N5)

UCONN

106.3EID50/mL

-

AB288334

9

A/gull/Maryland/704/1977 (H13N6)

UCONN

106.5EID50/mL

-

D90308.1

10

A/mallard duck/Astrakhan/263/1982 (H14N5)

UCONN

106.2EID50/mL

-

CY014604.1

11

A/wedge-tailed shearwater/Western Australia/2576/1979 (H15N9)

UCONN

105.4EID50/mL

-

CY006010.1

12

A/shorebird/Delaware/168/2006(H16N3)

UCONN

106.0EID50/mL

-

EU030976.1

13

Newcastle disease virus (NDV): Lasota

GVRI

108.0EID50/mL

-

JF950510.1

14

Infectious bronchitis virus (IBV): M41

GVRI

108.3EID50/mL

-

DQ834384

15

Infectious laryngotracheitis virus (ILTV)

GVRI

105.8EID50/mL

-

NC_006623.1

16

A/Mallard/Alberta/77 (H2N3)

UCONN

106.0EID50/mL

-

Peng Y et al. (2011) [19]

17

A/Turkey/GA/209092/02 (H5N2)

UCONN

107.8EID50/mL

-

Peng Y et al. (2011) [19]

18

A/Turkey/CA/35621/84 (H5N3)

UCONN

106.5EID50/mL

-

Peng Y et al. (2011) [19]

19

A/waterfowl/GA/269452-56/03 (H5N7)

UCONN

107.0EID50/mL

-

Peng Y et al. (2011) [19]

20

A/Turkey/WI/68 (H5N9)

UCONN

107.2EID50/mL

-

Peng Y et al. (2011) [19]

21

A/Chicken/NY/273874/03 (H7N2)

UCONN

107.0EID50/mL

-

Peng Y et al. (2011) [19]

22

A/Duck/HK/876/80 (H10N3)

HKU

106.0EID50/mL

+

Xie Z et al. (2006) [16]

23

A/Chicken/Guangxi/90C/2011 (H1N2)

GVRI

106.3EID50/mL

-

HA and HI test

24

A/Duck/Guangxi/070D/2010 (H4N6)

GVRI

106.2EID50/mL

-

HA and HI test

25

A/chicken PA/3979/97 (H7N2)

PU

106.6EID50/mL

-

HA and HI test

26

A/duck/PA/2099/12 (H11N9)

PU

106.0EID50/mL

-

HA and HI test

27

A/Guangxi/1415/15 (H1N1)

GXCDC

105.8EID50/mL

-

HA and HI test

28

A/Guangxi/1241/14 (H1N1)

GXCDC

106.0EID50/mL

-

HA and HI test

29

A/Guangxi/1420 /15 (H3N2)

GXCDC

105.6EID50/mL

-

HA and HI test

30

A/Guangxi/1632/15 (H3N2)

GXCDC

106.2EID50/mL

-

HA and HI test

31

B/Guangxi/1418/15

GXCDC

105.8EID50/mL

-

HA and HI test

32

B/Guangxi/1470/15

GXCDC

105.6EID50/mL

-

HA and HI test

  1. GVRI Guangxi Veterinary Research Institute, Nanning, Guangxi, China; UCONN University of Connecticut, USA; PU University of Pennsylvania, USA; HKU University of Hong Kong, China; GXCDC Guangxi Provincial Center for Disease Control and Prevention, China