Table 2 Small insertions/deletions and associated variations of ORFs in OsHV-1 variants
ORF | Variants | Positionsa | Variation of nucleotides | Variation of amino acids |
|---|---|---|---|---|
3 | OsHV-1-SB | None | GAGG-TATTGCTGCTGCCAGTAACAACACCACC | None |
OsHV-1 | 28 | GAGGGTATTGCTGCTGCCAGTAACAA---CACC | EGIAAASNNT | |
AVNV | 28 | GAGGGTATTGCTGCTGCCAGTAACAA---CACC | EGIAAASNNT | |
12 | OsHV-1-SB | None | GATAA-GGAAGAA | None |
OsHV-1 | 99 | GATAAAGGAAGA | DKGR | |
AVNV | 99 | GATAAAGGAAGA | DKGR | |
21 | OsHV-1-SB | 1942 | (TTC)4TACCAAAATGGTGAGGAGGGTTCA | FFFFYQNGEEGS |
OsHV-1 | 1942 | (TTC)3TACCAAAATGGTGAGGAGGGTTCA | FFF-YQNGEEGS | |
AVNV | 1942 | (TTC)3TACCAAAATGGTGAGGAGGGT-CAT | FFF-YQNGEEGH | |
38 | OsHV-1-SB | None | AAGCC-ATG | None |
OsHV-1 | 118 | AAGCCCATG | KPM | |
AVNV | 118 | AAGCCCAT- | KPM | |
38 | OsHV-1-SB | 398 | GATTTTTT--CAC | DFFH |
OsHV-1 | 524 | GATTTTTTT-CAC | DFFT | |
AVNV | None | GATTTTTTTTCAC | None | |
68 | OsHV-1-SB | 451 | GGA(GGT)6GGA | GGGGGGGG |
OsHV-1 | 451 | GGA---------(GGT)3GGA | G---GGGG | |
AVNV | 451 | GGA------(GGT)4GGA | G--GGGGG | |
70 | OsHV-1-SB | 472 | CAC--TTCAAAAAT | HFKN |
OsHV-1 | 472 | CACACTTCAAAA | HTSK | |
AVNV | 472 | CACACTTCAAAA | HTSK | |
106 | OsHV-1-SB | 18 | GGGGGGGTTTGTA | GGFV |
OsHV-1 | 553 | GGGGGG-TTTGTA | GGFV | |
AVNV | 553 | GGGGGG-TTTGTA | GGFV | |
106 | OsHV-1-SB | 610 | G(GAG)8TGA | GGGGGGGGV |
OsHV-1 | 1143 | G(GAG)5---------TGA | GGGGG---V | |
AVNV | 1143 | G(GAG)3------------TGA | GGGG----V | |
120 | OsHV-1-SB | 301 | AACAGGGGGGAT | NRGD |
OsHV-1 | 301 | AACA-AGGGGAT | NKGI | |
AVNV | 301 | AACGGGGGGGAT | NGGD |