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Table 2 Differentially accumulated proteins between mock-inoculated leaves and RSV-infected leaves

From: iTRAQ-based quantitative proteomics analysis of rice leaves infected by Rice stripe virus reveals several proteins involved in symptom formation

Accession number

Protein name categorized by process

Cov (95)

Number of Matching Peptides

Ratio

P-Value

 

Chlorophyll biosynthetic process

    

115453785

Magnesium-chelatase subunit ChlI, chloroplastic

46.7

29

17.5

4.50 × 10-8

115438661

Uroporphyrinogen decarboxylase 1, chloroplastic

14.9

8

13.4

2.85 × 10-2

115444475

Porphobilinogen deaminase, chloroplastic

51.1

21

11.7

4.50 × 10-4

115456135

Magnesium-chelatase subunit ChlD, chloroplastic

27.8

23

9.4

5.19 × 10-7

115477483

Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic

34.7

26

5.3

2.85 × 10-2

115452897

Uroporphyrinogen decarboxylase 2, chloroplastic

36.4

21

5.0

1.83 × 10-2

115436038

Protoporphyrinogen oxidase, chloroplastic

21.3

12

4.8

3.07 × 10-4

115435974

Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase

42.2

25

3.7

1.16 × 10-5

115469822

Delta-aminolevulinic acid dehydratase, chloroplastic

29.1

16

3.5

4.11 × 10-4

115482796

Glutamyl-tRNA reductase, chloroplastic

16.4

9

3.4

1.34 × 10-3

 

Photosynthesis

    

109156602

Ribulose bisphosphate carboxylase large chain

82.2

508

44.1

1.71 × 10-5

115472625

Oxygen-evolving enhancer protein 3

41.5

57

31.9

3.46 × 10-5

115436780

Putative 33 kDa oxygen evolving protein of photosystem II

59.2

119

28.3

2.30 × 10-10

115470529

Probable photosystem II oxygen-evolving complex protein 2

58.3

62

21.1

8.92 × 10-4

115488344

Photosystem I reaction center subunit XI, chloroplast

30.8

13

19.1

3.57 × 10-2

115472753

Chlorophyll a/b-binding protein

49.0

39

18.7

8.07 × 10-4

115477831

Chloroplast photosystem I reaction center subunit II-like protein

59.1

50

18.4

3.46 × 10-7

115476576

Putative chlorophyll a/b-binding protein

36.5

27

14.5

2.05 × 10-2

115458738

OSJNBa0036B21.6 protein

38.5

19

13.7

2.74 × 10-4

115484899

Chlorophyll a/b-binding protein

63.2

67

13.3

1.17 × 10-5

115470199

PsbQ domain protein family, putative-like protein

28.4

11

10.9

1.53 × 10-3

115472785

Putative chlorophyll a/b-binding protein of LHCII type III, chloroplast

50.4

20

10.4

4.90 × 10-3

115446893

Putative Oxygen-evolving enhancer protein 3-2, chloroplast

26.2

6

10.1

2.74 × 10-2

115487694

Photosystem I reaction centre subunit N, chloroplast

28.2

8

10.0

2.12 × 10-2

115450991

Ribulose-phosphate 3-epimerase, chloroplastic

50.0

28

7.8

8.74 × 10-4

115467828

Chlorophyll a/b-binding protein

31.1

27

7.8

6.31 × 10-3

115452127

Fructose-1,6-bisphosphatase, chloroplastic

38.9

45

6.8

5.54 × 10-6

115482366

PsbP family protein

18.1

16

5.6

1.14 × 10-3

115465942

Ferredoxin--NADP reductase, leaf isozyme, chloroplastic

49.7

66

5.4

5.64 × 10-3

115447507

Putative ferredoxin-thioredoxin reductase

20.1

4

2.5

2.91 × 10-2

 

Defense response

    

115458852

Bet v I allergen family protein

29.9

5

0.3

1.89 × 10-3

115452513

Pathogenesis-related protein 1

49.4

7

0.1

7.92 × 10-4

115489022

Pathogenesis-related protein

29.8

5

0.04

9.16 × 10-4

115489014

Pathogenesis-related protein PR10

25.6

4

0.03

1.88 × 10-2

 

Proteolysis

    

115470052

ATP-dependent zinc metalloprotease FTSH 1, chloroplastic

42.6

50

9.9

3.31 × 10-8

115453893

Membrane-associated zinc metalloprotease family protein

17.6

7

7.7

8.99 × 10-4

115489316

Eukaryotic aspartyl protease family protein

25.1

10

6.8

1.04 × 10-2

115447609

ATP-dependent zinc metalloprotease FTSH 7, chloroplastic

4.3

4

6.5

3.77 × 10-2

115480844

Serine carboxypeptidase family protein

13.3

8

5.6

3.69 × 10-2

115435898

ATP-dependent Clp protease proteolytic subunit

18.5

4

3.5

2.12 × 10-2

115450022

Oligopeptidase A-like

24.2

20

3.2

1.35 × 10-4

115452585

Probable glutamyl endopeptidase, chloroplastic

15.0

18

2.9

6.00 × 10-3

115488046

Serine carboxypeptidase 1

11.2

4

2.7

4.20 × 10-2

115444859

Peptidase aspartic

24.1

10

0.5

4.99 × 10-2

115437452

Ubiquitin carboxyl-terminal hydrolase

16.2

7

0.4

3.60 × 10-2

115482252

Ubiquitin-conjugating enzyme E2-23 kDa

20.1

3

0.4

1.14 × 10-2

115483755

Ubiquitin-activating enzyme E1 2

22.6

25

0.4

3.41 × 10-3

115463349

Putative DNA-binding protein GBP16

26.0

15

0.4

1.26 × 10-2

115454751

Proteasome subunit beta type-2

30.2

9

0.4

2.65 × 10-2

115465685

Putative serine carboxypeptidase

24.9

12

0.4

4.19 × 10-3

115451123

Proteasome subunit alpha type-6

43.1

13

0.3

1.22 × 10-3

115456219

Leukotriene A-4 hydrolase homolog

20.8

12

0.3

6.69 × 10-3

115480143

Proteasome subunit beta type

36.3

7

0.3

1.63 × 10-2

115444057

Proteasome subunit alpha type-1

40.0

13

0.3

1.08 × 10-2

115440299

Putative insulin degrading enzyme

3.0

2

0.3

2.91 × 10-2

115440617

Proteasome subunit alpha type-3

39.4

10

0.3

4.04 × 10-2

115480019

Proteasome subunit beta type-1

28.1

6

0.2

7.50 × 10-3

115448935

Proteasome subunit beta type

40.7

12

0.2

6.34 × 10-4

115476300

Aminopeptidase M1-B

22.7

19

0.2

8.85 × 10-5

115461973

Aspartic proteinase

23.8

11

0.2

3.50 × 10-3

115445047

Aminopeptidase M1-A

18.8

17

0.2

1.04 × 10-5

115451209

Eukaryotic aspartyl protease family protein

11.4

4

0.2

2.37 × 10-3

 

Protein transport

    

115475569

Preprotein translocase subunit SECY, chloroplastic

4.1

3

5.5

1.76 × 10-3

115454153

SEC1 family transport protein SLY1

8.0

4

5.3

1.93 × 10-2

115451815

Translocase of chloroplast

20.2

7

3.1

1.42 × 10-2

115452177

Protein TOC75, chloroplastic

34.4

25

2.9

3.10 × 10-6

115435528

Importin-alpha re-exporter

5.5

2

0.5

7.40 × 10-4

115435714

GTP-binding protein

21.2

3

0.3

4.33 × 10-2

115463933

Putative GDP dissociation inhibitor

30.8

16

0.3

3.53 × 10-5

115454911

Coatomer subunit alpha-1

22.6

25

0.3

4.93 × 10-5

115461356

Clathrin light chain 1

14.6

3

0.2

4.25 × 10-2

115463119

Coatomer subunit delta-1

11.5

7

0.2

1.90 × 10-3

 

Translation

    

115480611

Cysteinyl-tRNA synthetase

11.8

6

8.7

1.93 × 10-3

115450395

50S ribosomal protein L11, chloroplast

38.1

13

7.2

2.71 × 10-2

115488938

Elongation factor Ts

25.6

45

6.7

1.06 × 10-9

115436768

Tyrosine--tRNA ligase

22.3

12

6.6

3.46 × 10-3

115472897

Ribosome-recycling factor, chloroplastic

31.2

17

6.6

1.13 × 10-3

115449027

Putative isoleucyl-tRNA synthetase

8.2

8

6.3

1.95 × 10-6

115470767

Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic

9.6

10

6.1

4.16 × 10-4

115445399

Putative 50S ribosomal protein L21, chloroplast

25.7

7

5.8

1.12 × 10-2

115489150

60S ribosomal protein L2

30.6

11

4.8

6.71 × 10-3

115486501

Peptide chain release factor 1

17.8

7

4.7

4.88 × 10-4

50233964

30S ribosomal protein S2, chloroplastic

25.9

10

4.5

8.95 × 10-4

115438779

Peptide deformylase 1B, chloroplastic

16.4

5

4.1

4.50 × 10-2

115458788

OSJNBa0072F16.12 protein

21.3

5

3.9

4.05 × 10-2

115450427

50S ribosomal protein L5, chloroplastic

42.6

17

3.9

1.43 × 10-3

115448755

Putative histidine-tRNA ligase

6.6

4

3.8

4.60 × 10-2

115451609

50S ribosomal protein L15, chloroplast

29.7

11

3.5

3.81 × 10-2

115446545

Putative threonyl-tRNA synthetase

14.1

9

2.9

1.25 × 10-6

115439267

Met-tRNAi formyl transferase-like

20.7

6

2.8

2.49 × 10-3

115465593

Translation initiation factor IF-2

14.3

7

2.5

4.04 × 10-2

115463659

Putative chloroplast ribosomal protein L1

30.6

24

2.4

1.55 × 10-3

115487526

60S ribosomal protein L3

29.3

17

2.1

1.93 × 10-2

115447385

Lysine--tRNA ligase

14.5

9

1.5

4.36 × 10-2

115488928

Tryptophanyl-tRNA synthetase

21.8

7

0.5

4.03 × 10-2

115453877

40S ribosomal protein S3

44.7

14

0.5

2.32 × 10-3

115487104

40S ribosomal protein S16

27.5

6

0.4

1.16 × 10-2

115434960

Putative tRNA-glutamine synthetase

11.2

8

0.3

7.99 × 10-3

115473889

Elongation factor 1-beta

39.7

21

0.3

1.27 × 10-2

115486179

40S ribosomal protein S9

26.2

6

0.3

2.61 × 10-3

115475427

Putative 60S ribosomal protein L7

22.5

9

0.2

2.22 × 10-2

 

Protein folding

    

115444001

Putative uncharacterized protein P0576F08.31

16.7

6

22.9

1.64 × 10-4

115458444

GrpE protein homolog

26.6

9

18.2

1.12 × 10-2

115476198

Putative peptidyl-prolyl cis-trans isomerase, chloroplast

34.3

21

14.9

5.61 × 10-5

115449059

Putative 20 kDa chaperonin, chloroplast

46.3

9

8.2

1.49 × 10-2

115461585

Peptidyl-prolyl cis-trans isomerase

39.2

23

7.7

3.33 × 10-3

115460872

OSJNBb0079B02.1 protein

4.6

3

6.1

2.96 × 10-2

115467746

Trigger factor-like

39.5

27

4.8

1.77 × 10-4

115472829

Putative peptidyl-proly cis-trans isomerase protein

29.2

20

4.7

5.14 × 10-5

115448437

Putative protease IV

14.5

10

4.7

6.37 × 10-3

115472151

Peptidyl-prolyl cis-trans isomerase

23.3

5

4.6

4.48 × 10-2

115488160

60 kDa chaperonin alpha subunit

55.5

64

3.8

5.70 × 10-5

115473507

Receptor protein kinase

11.7

8

3.8

1.55 × 10-2

115466004

Putative chaperonin 60 beta

48.2

63

3.7

1.65 × 10-3

115475740

Putative uncharacterized protein OSJNBb0075O18.114

23.2

6

3.6

6.47 × 10-3

115465267

Serine/threonine-protein kinase SNT7

13.6

8

3.4

1.46 × 10-2

115448713

Peptidyl-prolyl cis-trans isomerase

34.3

11

3.1

8.95 × 10-4

115484731

ABC-1 domain containing protein

9.0

7

2.9

1.57 × 10-2

115441683

ABC1-like

5.3

3

2.8

4.11 × 10-2

115477014

Putative heat-shock protein

21.0

17

2.5

1.11 × 10-2

115463261

Putative DnaJ protein

25.3

14

2.5

4.82 × 10-3

115487998

70 kDa heat shock protein

45.4

60

2.3

1.13 × 10-2

115469982

Endoplasmin homolog precursor

26.7

28

0.5

1.62 × 10-2

115456045

T-complex protein 1, theta subunit

34.1

17

0.4

1.77 × 10-2

115462083

Chaperonin protein

19.4

11

0.3

3.37 × 10-2

115471369

Calreticulin

19.8

9

0.2

1.11 × 10-2

115477393

Putative 70 kDa peptidylprolyl isomerase

15.3

9

0.2

3.70 × 10-4

115468394

T-complex protein 1 subunit gamma

21.3

12

0.2

1.36 × 10-3

115458184

Calnexin

26.6

15

0.2

4.69 × 10-4

 

Monosaccharide metabolism

    

115458768

Glyceraldehyde-3-phosphate dehydrogenase

63.4

120

22.5

1.98 × 10-4

115484401

Fructose-bisphosphate aldolase, chloroplastic

74.0

126

22.1

4.10 × 10-7

115468886

Fructose-bisphosphate aldolase

57.3

49

20.5

8.04 × 10-7

115455637

Malate dehydrogenase

67.0

35

12.6

8.32 × 10-4

115450493

Glyceraldehyde-3-phosphate dehydrogenase

57.2

91

7.7

2.32 × 10-5

115466256

Putative enolase

46.0

32

7.3

1.48 × 10-2

115470849

Putative ribose-5-phosphate isomerase

52.5

32

5.6

1.19 × 10-2

115477891

PfkB type carbohydrate kinase protein family-like

12.1

4

5.3

1.34 × 10-2

115434516

Triosephosphate isomerase, cytosolic

69.2

29

5.0

4.75 × 10-2

115462281

Fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase

22.9

20

5.0

8.62 × 10-8

115479643

Glucose-6-phosphate isomerase

29.9

19

4.8

3.56 × 10-4

115457638

OSJNBa0023J03.8 protein

31.3

8

4.5

2.00 × 10-2

115455133

4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic

35.9

19

3.5

7.98 × 10-4

115437808

Oxidoreductase-like

24.3

8

2.3

3.35 × 10-2

115464965

Hexokinase-5

24.1

10

2.2

2.59 × 10-2

115439869

Hexokinase-6

27.1

14

2.1

1.22 × 10-2

115452337

L-ascorbate peroxidase 1, cytosolic

49.2

29

0.4

9.02 × 10-3

115467370

Putative pyrophosphate-dependent phosphofructokinase beta subunit

31.2

17

0.4

9.90 × 10-3

115484175

Pyruvate kinase

31.3

23

0.3

2.35 × 10-2

115465974

6-phosphogluconate dehydrogenase, decarboxylating 1

44.8

29

0.3

6.70 × 10-7

115434198

Fructose-bisphosphate aldolase

24.5

10

0.3

1.53 × 10-2

115441963

Putative transaldolase

42.6

22

0.2

2.29 × 10-3

115473973

Xylose isomerase

34.5

17

0.2

1.06 × 10-5

 

Disaccharide metabolism

    

115439937

Putative trehalose-6-phosphate synthase/phosphatase

5.0

5

4.1

2.00 × 10-2

115452927

Sucrose synthase 4

9.4

9

0.5

1.24 × 10-2

115466896

Sucrose synthase 2

36.1

32

0.4

1.10 × 10-3

115453437

Sucrose synthase 1

43.3

36

0.1

2.55 × 10-5

 

Polysaccharide metabolism

    

115471703

Granule binding starch synthase II

22.2

14

25.6

7.88 × 10-5

115474235

Putative uncharacterized protein P0034A04.101-1

26.4

30

17.4

5.07 × 10-5

115451283

Inositol-3-phosphate synthase

23.7

11

9.2

4.04 × 10-5

115476014

Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic

36.1

23

6.4

7.94 × 10-3

115455167

Glucose-1-phosphate adenylyltransferase

42.7

30

4.4

4.71 × 10-8

115460666

Soluble starch synthase III-1

11.5

16

3.8

3.09 × 10-2

115461086

Probable UDP-arabinopyranose mutase 2

10.7

4

0.3

1.00 × 10-2

115470060

1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic

7.3

6

0.1

1.93 × 10-3

115454033

UDP-arabinopyranose mutase 1

52.2

24

0.1

1.53 × 10-6

115459168

Chitinase 4

11.8

3

0.1

1.53 × 10-2

 

Fatty acid metabolism

    

115444801

Lipoxygenase

16.3

12

17.1

4.99 × 10-6

115489048

Lipoxygenase

17.6

15

7.0

7.04 × 10-3

115441871

Acyl-[acyl-carrier-protein] desaturase 2, chloroplastic

11.5

4

4.6

1.66 × 10-2

115436430

Putative tetrafunctional protein of glyoxysomal fatty acid beta-oxidation

17.3

13

0.3

2.76 × 10-4

115445513

Peroxisomal fatty acid beta-oxidation multifunctional protein

21.9

18

0.1

7.07 × 10-8

 

Amino acid metabolism

    

115455221

Serine hydroxymethyltransferase

57.1

73

22.1

4.47 × 10-12

115461066

Glutamine synthetase, chloroplastic

61.0

69

20.1

5.47 × 10-4

115460656

Aminomethyltransferase

57.1

51

19.8

4.34 × 10-5

115442595

Cysteine synthase

51.3

60

14.6

1.19 × 10-4

115439533

Glycine dehydrogenase P protein

60.8

157

12.8

1.08 × 10-4

115457070

Cysteine synthase

43.0

18

9.7

3.31 × 10-5

115478398

Aspartate kinase-homoserine dehydrogenase

10.9

11

5.8

2.85 × 10-3

115476972

Putative 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase

23.6

12

5.2

2.76 × 10-4

115433966

Os01g0101200 protein

19.0

10

3.1

2.48 × 10-2

115480417

Putative dehydroquinate synthase

37.9

20

2.8

7.39 × 10-3

115450561

ATP phosphoribosyltransferase, chloroplastic

22.8

10

2.7

1.57 × 10-2

115448201

Carbamoyl-phosphate synthase small chain, chloroplastic

20.7

9

2.7

4.08 × 10-2

115445929

Probable diaminopimelate decarboxylase, chloroplastic

30.4

14

2.5

2.14 × 10-3

115486343

Phosphoserine phosphatase

17.6

4

2.5

4.98 × 10-2

115468570

Cysteine synthase

11.2

5

2.3

4.85 × 10-2

115482324

Glutamine synthetase family

4.9

4

0.6

3.26 × 10-2

115461214

Methylthioribose kinase 1

14.2

6

0.4

4.30 × 10-2

115449517

Glutathione reductase, cytosolic

20.8

9

0.4

2.44 × 10-2

115456165

Probable methylenetetrahydrofolate reductase

36.4

24

0.4

9.95 × 10-6

115466226

3-phosphoshikimate 1-carboxyvinyltransferase

22.7

12

0.4

3.98 × 10-2

115434790

Phospholipase D alpha 1

28.5

23

0.3

6.75 × 10-4

115454997

Glutamate decarboxylase

22.4

10

0.3

7.16 × 10-3

115447403

Phenylalanine ammonia-lyase

45.6

36

0.1

2.39 × 10-2

 

Generation of precursor metabolites and energy

    

115472339

Putative ATP synthase gamma chain 1, chloroplast

44.4

70

24.9

1.72 × 10-9

115472727

Cytochrome b6-f complex iron-sulfur subunit, chloroplastic

56.0

37

23.1

1.34 × 10-4

115457390

ATP synthase B chain

50.3

23

11.7

2.97 × 10-3

115435200

Putative phosphoenolpyruvate carboxylase 1

29.0

34

7.4

1.51 × 10-4

115452259

ATP synthase B chain, chloroplast

34.6

30

5.8

8.67 × 10-4

115448701

Putative H(+)-transporting ATP synthase

26.3

25

5.1

8.73 × 10-4

115469362

Putative vacuolar proton-ATPase

43.4

36

0.6

1.69 × 10-2

115435934

NAD-dependent isocitrate dehydrogenase a

29.3

11

0.6

3.96 × 10-2

115474559

Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial

24.9

8

0.5

1.16 × 10-2

115438975

Putative H + -exporting ATPase

40.0

11

0.5

6.50 × 10-3

115444791

Citrate synthase

26.9

13

0.4

2.19 × 10-3

115447367

Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial

31.0

14

0.3

1.77 × 10-2

115470583

Ferredoxin--NADP reductase, embryo isozyme, chloroplastic

16.4

6

0.3

5.45 × 10-3

115470493

Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial

13.2

9

0.2

2.91 × 10-3

115469332

Glutaredoxin-C8

36.4

3

0.1

4.59 × 10-2

115459340

Glutaredoxin-C6

43.8

7

0.1

9.69 × 10-3

115470941

Thioredoxin H1

40.2

11

0.1

7.29 × 10-3

 

Vitamin metabolism

    

115472485

Thiamine thiazole synthase, chloroplastic

49.8

29

6.7

5.04 × 10-3

115454593

Thiamine biosynthesis protein thiC

25.7

14

5.4

3.81 × 10-7

115446113

Riboflavin biosynthesis protein RibD family protein

9.2

4

3.9

1.81 × 10-2

115482032

GDP-mannose 3,5-epimerase 1

42.6

26

2.7

4.02 × 10-2

 

Nucleotide metabolism

    

115475007

Putative uncharacterized protein OJ1590_E05.35-1

10.5

4

9.5

7.33 × 10-3

115455473

WRKY DNA binding domain containing protein

4.9

5

5.1

1.59 × 10-2

115450117

(RAP Annotation release2) Formyltetrahydrofolate deformylase family protein

13.2

4

4.2

1.28 × 10-2

115462253

Probable GTP diphosphokinase CRSH2, chloroplastic

15.7

9

3.8

4.78 × 10-2

115480339

Deoxyribodipyrimidine photolyase family protein-like

8.5

6

3.5

1.70 × 10-2

115488968

Nucleoside diphosphate kinase

31.8

11

3.3

9.20 × 10-3

115454773

Adenylosuccinate synthetase 2, chloroplastic

34.0

21

3.1

8.43 × 10-4

115464251

Putative uracil phosphoribosyltransferase

28.9

9

3.0

7.42 × 10-4

115451155

SAP-like protein

13.1

4

2.9

4.14 × 10-2

 

Isoprenoid metabolism

    

115472641

Putative isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase

12.6

3

15.6

7.33 × 10-3

115447171

4-Hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic

28.2

21

9.2

1.37 × 10-8

115471093

Zeta-carotene desaturase

26.8

18

7.9

4.21 × 10-6

115458652

Zeaxanthin epoxidase, chloroplastic

16.2

10

5.9

3.86 × 10-5

115434044

1-Deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic

24.7

15

4.5

3.59 × 10-2

115451171

Phytoene dehydrogenase, chloroplastic/chromoplastic

15.4

9

2.8

2.84 × 10-2

 

Phosphorus metabolism

    

115463815

Pyruvate, phosphate dikinase 1, chloroplastic

40.4

51

7.4

1.85 × 10-11

115448919

Chloroplast inorganic pyrophosphatase

42.2

19

6.3

2.57 × 10-2

115488252

Phosphoglucan, water dikinase, chloroplastic

12.9

15

3.8

2.37 × 10-6

115468200

Alpha-glucan water dikinase

13.0

18

3.0

8.67 × 10-5

 

Sulfur metabolism

    

115456862

ATP sulfurylase

55.6

17

7.0

2.17 × 10-3

115472303

Probable 5′-adenylylsulfate reductase 1, chloroplastic

20.6

11

3.9

5.43 × 10-4

115450913

Glutathione reductase, chloroplast

31.0

20

3.3

1.25 × 10-3

 

Macromolecule catabolic process

    

115444937

26S proteasome regulatory particle triple-A ATPase subunit 6

30.9

16

0.4

3.81 × 10-3

115466690

Putative 26S proteasome regulatory particle triple-A ATPase subunit 5a

20.3

12

0.2

2.09 × 10-3

 

Response to reactive oxygen species

    

115446663

Probable L-ascorbate peroxidase 8, chloroplastic

27.2

31

6.7

2.50 × 10-2

115450521

Catalase

47.2

38

6.2

1.09 × 10-2

115477837

Superoxide dismutase [Cu-Zn], chloroplastic

54.0

28

5.4

1.30 × 10-2

115473833

Thioredoxin reductase NTRC

33.0

12

4.4

1.38 × 10-5

115477687

L-Ascorbate peroxidase

34.4

24

3.2

1.48 × 10-2

 

Cofactor metabolism

    

115479433

Formate-tetrahydrofolate ligase

29.4

25

3.0

4.12 × 10-3

115440827

ABC transporter subunit-like

13.2

8

2.7

1.62 × 10-2

115434288

Putative SufD

18.1

9

2.6

4.64 × 10-2

 

Regulation of nitrogen utilization

    

115477733

Putative NADPH-dependent reductase

41.2

18

7.4

2.14 × 10-7

115445203

Putative UOS1

30.3

19

6.9

1.72 × 10-6

115469824

Putative UOS1

23.3

13

5.5

6.31 × 10-4

115453029

Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic

24.2

11

4.6

6.54 × 10-3

 

Cellular homeostasis

    

115472057

Thioredoxin-like protein CDSP32, chloroplastic

29.9

13

10.1

2.89 × 10-5

115444771

Peroxiredoxin-2E-2, chloroplastic

63.1

34

7.7

6.91 × 10-5

115466906

Peroxiredoxin Q, chloroplastic

45.2

22

7.6

5.32 × 10-4

115446541

2-Cys peroxiredoxin BAS1, chloroplastic

56.3

36

5.2

3.44 × 10-3

115477793

Putative auxin-regulated protein

32.8

13

4.5

3.11 × 10-2

115436320

Dihydrolipoyl dehydrogenase

56.3

47

3.9

4.04 × 10-5

115435536

Peptide transporter protein-like

10.7

3

2.8

1.39 × 10-2

115471449

Putative uncharacterized protein OJ1370_E02.126

39.3

10

1.8

2.24 × 10-2

115464793

Thioredoxin

14.9

3

0.5

3.06 × 10-2

115479475

Protein disulfide isomerase-like 2-3

15.7

5

0.3

2.01 × 10-2

115462193

Protein disulfide isomerase-like 2-1

17.2

6

0.3

1.99 × 10-3

115455973

Thioredoxin H2-2

14.2

2

0.2

3.38 × 10-2

115484585

Protein disulfide isomerase-like 1-1

28.1

20

0.1

9.78 × 10-8

 

Oxidation reduction

    

115484891

Rieske [2Fe-2S] domain

35.0

18

13.7

3.63 × 10-5

115459670

NAD(P)H-quinone oxidoreductase subunit M, chloroplastic

39.1

14

11.5

6.11 × 10-3

115481490

Flavonoid 3′-hydroxylase

6.1

3

7.8

3.64 × 10-2

115476190

Putative oxidoreductase, zinc-binding

51.0

34

6.6

3.97 × 10-6

115476820

Nitrate reductase [NADH] 1

6.3

5

6.0

1.29 × 10-2

115477461

Moco containing protein

34.5

13

5.1

1.02 × 10-3

115482950

Aldo/keto reductase family protein

9.3

3

5.1

2.94 × 10-3

115454109

Oxidoreductase, aldo/keto reductase family protein

38.5

16

4.9

2.69 × 10-4

115476618

Glyceraldehyde-3-phosphate dehydrogenase

36.5

29

4.7

8.09 × 10-3

115443657

Putative ferredoxin-NADP(H) oxidoreductase

55.1

51

4.3

2.52 × 10-3

115484125

L-galactono-1,4-lactone dehydrogenase 1, mitochondrial

6.7

3

3.9

1.56 × 10-3

115446723

Glucose/ribitol dehydrogenase family protein

19.1

4

2.6

1.50 × 10-2

115477843

Putative malate dehydrogenase [NADP], chloroplast

21.5

13

2.5

1.35 × 10-2

115438082

Cytosolic aldehyde dehydrogenase

21.5

11

2.1

4.10 × 10-2

115487892

NADP-dependent oxidoreductase P2

17.9

6

1.8

2.31 × 10-2

115456131

Putative alcohol dehydrogenase

26.7

6

0.6

4.09 × 10-2

115443911

NADPH-dependent mannose 6-phosphate reductase

26.9

12

0.6

1.66 × 10-2

115482810

Malic enzyme

20.2

11

0.5

2.47 × 10-3

115460254

OSJNBa0009P12.34 protein

12.4

4

0.5

1.82 × 10-2

115478070

Putative NADPH-dependent retinol dehydrogenase/reductase

26.1

8

0.4

3.40 × 10-2

115484519

Aldehyde dehydrogenase

12.0

5

0.4

7.24 × 10-3

115479375

Aldehyde dehydrogenase

29.9

15

0.4

6.28 × 10-3

115463191

Superoxide dismutase [Mn], mitochondrial

32.9

13

0.3

3.01 × 10-2

115464645

Hypothetical protein

5.7

3

0.3

3.11 × 10-2

115434810

NADH-cytochrome b5 reductase

22.8

7

0.3

2.15 × 10-2

115451245

Oxidoreductase, zinc-binding dehydrogenase family protein

16.1

5

0.3

1.48 × 10-2

115478148

Isopenicillin N synthase family protein

5.2

2

0.2

7.89 × 10-3

115462115

Putative 1-aminocyclopropane-1-carboxylate oxidase

11.0

3

0.2

1.34 × 10-2

 

Response to oxidative stress

    

115445243

Class III peroxidase 29

38.9

20

39.8

3.19 × 10-3

115460338

Haem peroxidase family protein

32.9

20

4.5

4.36 × 10-5

115436084

Class III peroxidase 11

26.2

8

4.4

2.78 × 10-2

115474059

Peroxidase

47.0

19

0.3

1.30 × 10-2

115436300

Class III peroxidase 16

23.1

10

0.3

2.50 × 10-2

115456523

Salt tolerance protein

27.5

7

0.2

5.25 × 10-4

115459848

Glutathione peroxidase

33.9

10

0.2

4.64 × 10-2

115442403

Putative peroxidase

37.9

19

0.1

3.85 × 10-4

 

Others

    

115450080

Cell division inhibitor-like

20.9

14

5.4

2.53 × 10-2

115450329

Peroxisomal membrane protein 11-1

21.9

5

4.8

2.94 × 10-2

115452321

Ribosomal protein L10 containing protein

50.9

15

4.1

3.30 × 10-4

115439157

Two pore calcium channel protein 1

2.0

1

3.8

3.56 × 10-2

115457630

Phototropin-2

17.0

12

2.9

1.21 × 10-4

115474273

Phosphoinositide phospholipase C

27.3

15

0.5

4.60 × 10-2

115446411

RNA binding protein Rp120

29.6

29

0.5

1.61 × 10-2

115448225

GTPase activating protein-like

5.2

4

0.3

5.92 × 10-3

115453079

Villin-3

20.7

17

0.3

5.15 × 10-3

115451401

Mitochondrial outer membrane protein porin 5

49.1

21

0.3

4.79 × 10-3

115441759

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2

10.3

6

0.3

1.12 × 10-4

297601526

Probable linoleate 9S-lipoxygenase 4

22.4

15

0.2

2.78 × 10-3

115434036

Putative isoflavone reductase

19.8

5

0.2

1.38 × 10-2

115486998

Non-specific lipid-transfer protein 2B

57.3

17

0.1

4.26 × 10-3

115444635

Response regulator

2.1

3

0.02

2.08 × 10-2

  1. Note: “Peptides (95 %)” indicates distinct peptides were identified with at least 95 % confidence (protein score cutoff > 1.5); “Cov (95)” means percentage of matching amino acids from identified peptides with confidence over 95 %; Ratio and P-value represents tag labeled for mock leaves: tag labeled for RSV-infected leaves. Ratio >1.5 is considered as downregulated and <0.67 is upregulated