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Table 1 Summary of the proteins identified by iTRAQ as being differentially accumulated in RSV-inoculated plants compared with mock-inoculated rice plants at 21dpi

From: iTRAQ-based quantitative proteomics analysis of rice leaves infected by Rice stripe virus reveals several proteins involved in symptom formation

Regulation

No. of proteins

David

GOa

Categoriesb

Percentagec

No. of functional groups

Down

448 (65.8 %)

332

317

203 BP

61.1

53

    

154 CC

46.4

20

    

233 MF

70.2

33

    

129 KEGG

38.9

16

  

unknown 116

    

Up

233 (34.2 %)

178

175

112-BP

62.9

17

    

64 CC

36.0

13

    

125 MF

70.2

16

    

7 -KEGG

39.9

13

  

unknown 55

    

Total

681

     
  1. Note: Using the David platform, 332 downregulated and 178 upregulated proteins were analyzed, and 317 and 175 proteins were annotated by GO, respectively. Annotated proteins were clustered by groups based on the BP, CC, MF and KEGG analyses
  2. aGO annotation: BP, biological process; CC, cellular component; MF, molecular function
  3. bCategories based on BP, CC, MF and KEGG
  4. cPercentage of total proteins annotated
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Virology Journal

ISSN: 1743-422X