Table 2 Infectious salmon anemia (ISAV) outbreaks caused by HPR7a and HPR7b viruses in Chile (2013–2014)
Analysis/case | Case 218 | Case 220 | Case 11732 | Case 302 | Case 304 | Case 272 |
|---|---|---|---|---|---|---|
RT-PCR-ISAV | + | + | + | + | + | + |
HPR sequencing | + | + | + | + | + | + |
Full sequence segment 5 | + | + | + | + | + | + |
Full sequence segment 6 | + | + | + | + | + | + |
Cell culture isolation | - | - | + | - | + | - |
HPR type | HPR7a | HPR7a | HPR7a | HPR7b | HPR7b | HPR7b |
Genogrup | EU-G3 | EU-G3 | EU-G3 | EU-G3 | EU-G3 | EU-G3 |
Segment 5 insert | F- | F- | F+ | F- | F- | F- |
Virus isolate | CGA/218 | CGA/220 | CGA/11732 | CGA/302 | CGA/304 | CGA/272 |
GenBank accession segment 5 | - | KJ944289 | KJ944293 | KJ944295 | KJ944297 | KJ944291 |
GenBank accession segment 6 | KJ944287 | KJ944288 | KJ944292 | KJ944294 | KJ944296 | KJ944290 |