Skip to main content

Table 1 Sweepoviruses used in this study

From: Genetic diversity and recombination analysis of sweepoviruses from Brazil

Species-Strain

Accession no

Identification according to databases

Origin

Reference

Acronym suggested in this studyb

 

HQ393450

SPLCV-US[BR:PA:08] a

Brazil

This study

SPLCV-US[BR:PA:08]

SPLCV-US

HQ393451

SPLCV-US[BR:SE:PV:08]

Brazil

This study

SPLCV-US[BR:SE:PV:08]

HQ393443

SPLCV-US[BR:BA:CA1:08]

Brazil

This study

SPLCV-US[BR:BA:CA1:08]

HQ393446

SPLCV-US[BR:BA:CA2:08]

Brazil

This study

SPLCV-US[BR:BA:CA2:08]

FJ969834

SPLCV-RS2[BR:Est1]

Brazil

Paprotka et al., 2010

SPLCV-US[BR:RS:Est1:07]

FJ969837

SPLCV-RS2[BR:Ros1]

Brazil

Paprotka et al., 2010

SPLCV-US[BR:RS:Ros1:07]

FJ969835

SPLCV-RS2[BR:Mac1]

Brazil

Paprotka et al., 2010

SPLCV-US[BR:RS:Mac1:07]

HQ393471

SPLCV-US[BR:SP:AM1:09]

Brazil

This study

SPLCV-US[BR:SP:AM1:09]

HQ393472

SPLCV-US[BR:SP:AM2:09]

Brazil

This study

SPLCV-US[BR:SP:AM2:09]

FJ969836

SPLCV-RS2[BR:Poa1]

Brazil

Paprotka et al., 2010

SPLCV-US[BR:RS:Poa1:07]

HQ393475

SPLCV-US[BR:SP:AM4:09]

Brazil

This study

SPLCV-US[BR:SP:AM4:09]

HQ393474

SPLCV-US[BR:SP:AM3:09]

Brazil

This study

SPLCV-US[BR:SP:AM3:09]

HM754641

SPLCV-[Haenam1]

South Korea

GenBank

SPLCV-US[KR:Hae1:09]

HM754637

SPLCV-[Yeojoo 507]

South Korea

GenBank

SPLCV-US[KR:Yeo507:09]

FJ560719

SPLCKrV-[J-508]

South Korea

GenBank

SPLCV-US[KR:Yeo508:08]

HM754639

SPLCV-[Haenam532]

South Korea

GenBank

SPLCV-US[KR:Hae532:09]

HM754638

SPLCV-[Haenam 519–3]

South Korea

GenBank

SPLCV-US[KR:Hae519:09]

HM754635

SPLCV-[Yeojoo 388]

South Korea

GenBank

SPLCV-US[KR:Yeo388:09]

HM754636

SPLCV-[Nonsan 445–2]

South Korea

GenBank

SPLCV-US[KR:Non445-2:09]

HM754634

SPLCV-[Chungju 263]

South Korea

GenBank

SPLCV-US[KR:Chu263:09]

HM754640

SPLCV-[Haenam 618–2]

South Korea

GenBank

SPLCV-US[KR:Hae618:09]

AF104036

SPLCV-US[US:Lou:94]

USA

Lotrakul & Valverde, 1999

SPLCV-US[US:Lou:94]

HQ393453

SPLCV-US[BR:RO:OPO:08]

Brazil

This study

SPLCV-US[BR:RO:OPO:08]

FJ176701

SPLCV-[Eastern China]

China

GenBank

SPLCV-US[CN:Jia:08]

AB433788

SPLCV-[Japan:Kyoto:1998]

Japan

GenBank

SPLCV-US[JR:Kyo:98]

HQ333141

SPLCV-[US:MS:WS1-4]

USA

Zhang & Ling, 2011

SPLCV-US[US:MS:WS1-4:07]

HQ333142

SPLCV-[US:MS:WS3-8]

USA

Zhang & Ling, 2011

SPLCV-US[US:MS:WS3-8:07]

HQ333140

SPLCV-[US:MS:4B-14]

USA

Zhang & Ling, 2011

SPLCV-US[US:MS:4b-14:07]

HQ333139

SPLCV-[US:MS:1B-1A]

USA

Zhang & Ling, 2011

SPLCV-US[US:MS:1b-1a:07]

SPLCV-CN

EU267799

SPLCV-[RL7]

China

GenBank

SPLCV-CN[CN:Yn:RL7:07]

FN806776

SPLCV-[Y338]

China

GenBank

SPLCV-CN[CN:Yn338:09]

EU253456

SPLCV-[RL31]

China

GenBank

SPLCV-CN[CN:Yn:RL31:07]

SPLCV-SP

HQ393473

SPLCV-SP[BR:AlvM:09]

Brazil

Albuquerque et al., 2011

SPLCV-SP[BR:SP:AlvM:09]

HQ393476

SPLCV-SP[BR:SP:PP:09]

Brazil

This study

SPLCV-SP[BR:SP:PP:09]

SPLCV-JP

AB433787

SPLCV-[Japan:Kumamoto:1998]

Japan

GenBank

SPLCV-JP[JR:Kum:98]

AB433786

SPLCV-[Japan:Miyazaki:1996]

Japan

GenBank

SPLCV-JP[JR:Miy:96]

SPLCV-SC

HQ333138

SPLCV-[US:SC:646B-11]

USA

Zhang & Ling, 2011

SPLCV-SC[US:SC:646-B11:06]

HQ333137

SPLCV-[US:SC:634–7]

USA

Zhang & Ling, 2011

SPLCV-SC[US:SC:634–7:06]

HQ333135

SPLCV-[US:SC:377–23]

USA

Zhang & Ling, 2011

SPLCV-SC[US:SC:377–23:06]

HQ333136

SPLCV-[US:SC:634–2]

USA

Zhang & Ling, 2011

SPLCV-SC[US:SC:634–2:06]

SPLCV-BR

HQ393445

SPLCV-BR[BR:BA:CA:08]

Brazil

This study

SPLCV-BR[BR:BA:CA:08]

HQ393460

SPLCV-BR[BR:RO:Cac:08]

Brazil

This study

SPLCV-BR[BR:RO:Cac:08]

HQ393455

SPLCV-BR[BR:RO:OPO:08]

Brazil

This study

SPLCV-BR[BR:RO:OPO:08]

HQ393449

SPLCV-BR[BR:SE:Ria:08]

Brazil

This study

SPLCV-BR[BR:SE:Ria:08]

HQ393442

SPLCV-BR[BR:BA:Uru:08]

Brazil

This study

SPLCV-BR[BR:BA:Uru:08]

SPLCV-PR

DQ644563

SPLCV-[N4]

Puerto Rico

GenBank

SPLCV-PR[PR:Me-N4:06]

DQ644562

SPLCV-[PR80-N2]

Puerto Rico

GenBank

SPLCV-PR[PR:80-N2:06]

SPLCV-PE

HQ393456

SPLCV-PE[BR:RO:PV:08]

Brazil

This study

SPLCV-PE[BR:RO:PV:08]

HQ393464

SPLCV-PE[BR:RS:MP1:09]

Brazil

This study

SPLCV-PE[BR:RS:MP1:09]

HQ393465

SPLCV-PE[BR:RS:MP2:09]

Brazil

This study

SPLCV-PE[BR:RS:MP2:09]

HQ393467

SPLCV-PE[BR:RS:MP5:09]

Brazil

This study

SPLCV-PE[BR:RS:MP5:09]

HQ393462

SPLCV-PE[BR:PE:CSF:08]

Brazil

This study

SPLCV-PE[BR:PE:CSF:08]

HQ393463

SPLCV-PE[BR:PE:CSF:08]

Brazil

This study

SPLCV-PE[BR:PE:CSF:08]

HQ393461

SPLCV-PE[BR:PB:PF:09]

Brazil

This study

SPLCV-PE[BR:PB:PF:09]

HQ393466

SPLCV-PE[BR:RS:MP4:09]

Brazil

This study

SPLCV-PE[BR:RS:MP4:09]

HQ393469

SPLCV-PE[BR:RS:MP7:09]

Brazil

This study

SPLCV-PE[BR:RS:MP7:09]

HQ393468

SPLCV-PE[BR:RS:MP6:09]

Brazil

This study

SPLCV-PE[BR:RS:MP6:09]

HQ393470

SPLCV-PE[BR:RS:MP3:09]

Brazil

This study

SPLCV-PE[BR:RS:MP3:09]

SPLCV-Fu

FJ515898

SPLCV-[Fp-3]

China

Yang et al., 2009

SPLCV-Fu[CN:Fj:Fp3:07]

FJ515897

SPLCV-[Fp-2]

China

Yang et al., 2009

SPLCV-Fu[CN:Fj:Fp2:07]

FJ515896

SPLCV-[Fp-1]

China

Yang et al., 2009

SPLCV-Fu[CN:Fj:Fp1:07]

SPLCV-ES

EU856364

SPLCV-ES[ES:CI:BG12:02]

Spain

Lozano et al., 2009

SPLCV-ES[ES:CI:BG12:02]

EF456744

SPLCV-ES[ES:CI:BG6:02]

Spain

Lozano et al., 2009

SPLCV-ES[ES:CI:BG6:02]

EU856366

SPLCV-ES[ES:CI:BG13:02]

Spain

Lozano et al., 2009

SPLCV-ES[ES:CI:BG13:02]

SPLCV-IT

AJ586885

SPLCV-IT[IT:Sic:02]

Italy

Briddon et al., 2005

SPLCV-IT[IT:Sic:02]

SPLCLaV-BR

FJ969833

SPLCV-RS1[BR:Tav1]

Brazil

Paprotka et al., 2010

SPLCLaV-BR[BR:RS:Tav1:07]

SPLCLaV-ES

EF456746

SPLCLaV-[ES:CI:BG27:02]

Spain

Lozano et al., 2009

SPLCLaV-ES[ES:CI:BG27:02]

EU839579

SPLCLaV-[ES:Mal:BG30:06]

Spain

Lozano et al., 2009

SPLCLaV-ES[ES:Mal:BG30:06]

SPLCBeV

FN432356

SPLCBV-[India:West Bengal:2008]

India

GenBank

SPLCBeV-[IN:Ben:08]

SPLCBRV

FJ969832

SPLCV-CE[BR:For1]

Brazil

Paprotka et al., 2010

SPLCBRV-[BR:CE:For1:07]

SPLCCaV

EF456742

SPLCCaV-[ES:CI:BG4:02]

Spain

Lozano et al., 2009

SPLCCaV-[ES:CI:BG4:02]

EF456745

SPLCCaV-[ES:CI:BG7:02]

Spain

Lozano et al., 2009

SPLCCaV-[ES:CI:BG7:02]

EU856365

SPLCCaV-[ES:CI:BG21:02]

Spain

Lozano et al., 2009

SPLCCaV-[ES:CI:BG21:02]

FJ529203

SPLCCaV-[ES:CI:BG25:02]

Spain

Lozano et al., 2009

SPLCCaV-[ES:CI:BG25:02]

SPLCShV

EU309693

SPLCV

China

GenBank

SPLCShV-[CN:Sha:07]

SPLCGoV

AF326775

SPLCGV-[16]

USA

Lotrakul et al., 2003

SPLCGoV-[US:Geo:16]

MerLCuV-US

HQ333143

SPGVaV-[US:MS:1B-3]

USA

Zhang & Ling, 2011

MerLCuV-US[US:MS:1B-3:07]

MerLCuV-BR

FJ969829

SPGVaV-PA[BR:Bel1]

Brazil

Paprotka et al., 2010

MerLCuV-BR[BR:PA:Bel1:07]

MerLCuV-PR

DQ644561

MeLCV-[PR:N1]

Puerto Rico

GenBank

MeLCuV-PR[PR:N1:06]

IYVMaV

EU839576

IYVV-[ES:Mal:IG1:06]

Spain

Lozano et al., 2009

IYVMaV-[ES:Mal:IG1:06]

IYVV

EU839578

IYVV-[ES:Mal:IG5:06]

Spain

Lozano et al., 2009

IYVV-[ES:Mal:IG5:06]

AJ132548

IYVV-[ES:98]

Spain

Banks et al., 1999

IYVV-[ES:98]

EU839577

IYVV-[ES:Mal:IG3:06]

Spain

Lozano et al., 2009

IYVV-[ES:Mal:IG3:06]

SPLCSPV

HQ393477

SPLCSPV-[BR:AlvM:09]

Brazil

Albuquerque et al., 2011

SPLCSPV-[BR:SP:AlvM:09]

SPMV

FJ969831

SPMaV-[BR:BSB1]

Brazil

Paprotka et al., 2010

SPMV-[BR:BSB1:07]

SPLCSCV

HQ333144

SPLCSCV-[US:SC:648B-9]

USA

Zhang & Ling, 2011

SPLCSCV-[US:SC:648-B9:06]

SPLCUV

FR751068

SPLCUV-[UG:KAMP:08]

Uganda

Wasswa et al., 2011

SPLCUV-[UG:KAMP:08]

SPLCESV

EF456741

SPLCESV-[ES:CI:BG1:02]

Spain

Lozano et al., 2009

SPLCESV-[ES:CI:BG1:02]

EF456743

SPLCESV-[ES:CI:BG5:02]

Spain

Lozano et al., 2009

SPLCESV-[ES:CI:BG5:02]

HQ393448

SPLCESV-[BR:BA:Uti:08]

Brazil

This study

SPLCESV-[BR:BA:Uti:08]

FJ151200

SPLCESV-[ES:Mal:IG2:06]

Spain

Lozano et al., 2009

SPLCESV-[ES:Mal:IG2:06]

HQ393458

SPLCESV-[BR:RO:Cac:08]

Brazil

This study

SPLCESV-[BR:RO:Cac:08]

SPGVV-PB

HQ393444

SPGVV-PB[BR:BA:CA:08]

Brazil

This study

SPGVV-PB[BR:BA:CA:08]

FJ969830

SPGVaV-PB1[BR:Sou1]

Brazil

Paprotka et al., 2010

SPGVV-PB[BR:PB:Sou1:07]

SPGVV-RO

HQ393459

SPGVV-RO[BR:RO:Cac:08]

Brazil

This study

SPGVV-RO[BR:RO:Cac:08]

HQ393457

SPGVV-RO[BR:RO:PV2:08]

Brazil

This study

SPGVV-RO[BR:RO:PV2:08]

HQ393454

SPGVV-RO[BR:RO:OPO:08]

Brazil

This study

SPGVV-RO[BR:RO:OPO:08]

HQ393447

SPGVV-RO[BR:BA:Uti:08]

Brazil

This study

SPGVV-RO[BR:BA:Uti:08]

HQ393452

SPGVV-RO[BR:SE:PV1:08]

Brazil

This study

SPGVV-RO[BR:SE:PV1:08]

SPLCCNV

DQ512731

SPLCV-[CN]

China

Luan et al., 2007

SPLCCNV-[CN:05]

 

JF736657

SPLCV-B3

China

GenBank

SPLCCNV-[CN:Zhe:10]

  1. aThe isolates present in this study are shown in bold.
  2. bComplete names of the viruses are shown in the Additional file 2.