Table 2 Percent amino acid and nucleotide identities between the untranslated regions and protein-coding genes (non-gapped columns) of CA7246 and isolates GH11, GP18, WA-MR and the partially sequenced isolate NZ-1
From: A divergent variant of Grapevine leafroll-associated virus 3is present in California
Gene | ORF | Length | Mass | % amino acid identity | % nucleotide identity | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
(nt) | (kDa) | GH11 | GP18 | WA-MR | NZ-1 | GH11 | GP18 | WA-MR | NZ-1 | ||
5’ UTR | - | 737 | - | - | - | - | - | 81.8 | 48.9 | 50.8 | - |
MET/HEL | 1a | 6714 | 246.81 | 91.8 | 71.0 | 71.0 | - | 89.5 | 66.0 | 66.0 | - |
RdRp | 1b | 1629 | 62.05 | 97.8 | 88.0 | 89.6 | - | 93.8 | 77.5 | 78.5 | - |
p5 | 3 | 138 | 5.14 | 93.3 | 77.8 | 75.6 | 93.3 | 92.8 | 70.3 | 72.5 | 93.5 |
HSP70h | 4 | 1650 | 59.26 | 96.2 | 85.4 | 86.0 | 95.5 | 93.0 | 75.3 | 75.1 | 91.9 |
p55 | 5 | 1452 | 55.06 | 94.4 | 75.0 | 73.9 | 94.0 | 91.8 | 68.8 | 68.2 | 88.6 |
CP | 6 | 942 | 34.63 | 96.2 | 88.2 | 90.7 | - | 92.1 | 77.7 | 79.2 | - |
CPm | 7 | 1434 | 53.02 | 93.1 | 77.8 | 77.8 | - | 90.9 | 71.6 | 71.6 | - |
p21 | 8 | 558 | 21.39 | 93.5 | 77.8 | 77.3 | - | 91.2 | 74.7 | 74.2 | - |
p19.6 | 9 | 534 | 19.44 | 91.0 | 54.2 | 56.5 | - | 90.5 | 60.7 | 62.4 | - |
p19.7 | 10 | 540 | 19.70 | 86.6 | 63.1 | 61.5 | - | 86.3 | 64.4 | 63.7 | - |
p4 | 11 | 111 | 3.95 | 77.8 | 30.6 | 25.0 | - | 83.8 | 44.1 | 39.6 | - |
p7 | 12 | 183 | 6.24 | 90.7 | 61.1 | 61.1 | - | 91.5 | 64.2 | 62.4 | - |
3’ UTR | - | 256 | - | - | - | - | - | 96.6 | 78.8 | 79.9 | - |