Primer pair
|
Sequence (5'-3')
|
Target region
|
Amplicon size (bp)
|
---|
LR3.HRM1.F
|
TAGACGTTAAAGATGTGAAGCG
|
GLRaV-3 ORF1a
|
167
|
LR3.HRM1.R
|
TCGTACACATCCACCATA
| | |
LR3.HRM2.F
|
GTCCTAGATTCGGATTTTGTCG
|
GLRaV-3 ORF1a
|
231
|
LR3.HRM2.R
|
GAATACTCTTCGCCCTATC
| | |
LR3.HRM3.F
|
CTGGTTGCTTTCGAGGTATATGAG
|
GLRaV-3 ORF1b
|
295
|
LR3.HRM3.R
|
CACTTCAAGGTGTTGCGCTT
| | |
LR3.HRM4.F
|
TAATCGGAGGTTTAGGTTCC
|
GLRaV-3 ORF4
|
226
|
LR3.HRM4.R
|
GTCGGTTCGTTAACAACAC
| | |
LR3.HRM5.F
|
TGTGTAAGAAGGTTATGGG
|
GLRaV-3 ORF6
|
224
|
LR3.HRM5.R
|
TACTGCCTTACCGGGTTTTC
| | |
LR3.HRM6.F
|
GTCACCAGGTGTTCCAAACC
|
GLRaV-3 ORF1a
|
305
|
LR3.HRM6.R
|
AACGCCCTGTATGTCCTCTC
| | |
LR3_Universal_F
|
TAAATGCTCTAGTAGGATTC
|
GLRaV-3 5'UTR
| |
621_430R
|
TAACCCAACACGACGATGAG
|
GLRaV-3 5'UTR
|
429a
|
623_564R
|
CTCACGCTAAACACACCAAG
|
GLRaV-3 5'UTR
|
563a
|
PL20_315R
|
GTTTGTAACAAAGAAACACG
|
GLRaV-3 5'UTR
|
314a
|
GH11_180R
|
CCAAAACGAAGACGAAAAGAAGAG
|
GLRaV-3 5'UTR
|
179a
|
LR_ORF1aR
|
CGTCCGCTTCACCCCTTTGG
|
GLRaV-3 ORF1a
| |
Vv_Actin_F [32]
|
CTTGCATCCCTCAGCACCTT
|
V. vinifera predicted actin-7
|
82
|
Vv_Actin_R [32]
|
TCCTGTGGACAATGGATGGA
| | |
- aAmplicon size if use together with LR_Universal_F.