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Table 1 Homology comparisons of 18 complete genomic sequences of NDV strains

From: Lack of detection of host associated differences in Newcastle disease viruses of genotype VIId isolated from chickens and geese

  Nucleotide identity (%) Amino acid homology (%)
Leader Trailer Total genome NP P M F HN L
Between genotype VIId and other genotypes 85.5–98.5 67.3–80.5 82.8–90.4 92.9–96.5 82.6–87.9 88.8–96.2 89.4–95.5 89.7–94.9 93.9–96.3
Between Goose-originated strains of genotype VIId 96.4–100.0 93.8–100.0 96.0–98.7 98.2–99.2 96.2–98.2 96.4–99.5 97.1–98.6 96.9–98.1 97.9–99.3
Between chicken-originated strains of genotype VIId 92.7–98.2 96.5–100.0 96.7–98.3 98.8–99.4 92.7–97.5 96.2–98.6 97.7–99.1 97.2–99.3 98.5–99.1
Between goose-originated and chicken-originated strains of genotype VIId 94.5–100.0 92.9–100.0 96.1–99.1 98.4–99.6 93.9–99.2 95.9–98.9 96.9–99.1 96.7–99.3 98.0–99.1