Table 2 PEDV strains investigated in this study
From: Isolation and characterization of a variant porcine epidemic diarrhea virus in China
Strain/Isolate | Accession No, Country | Strain/Isolate | Accession No, Country |
|---|---|---|---|
(a) Complete genome | VN122M6 | HQ883484, Vietnam | |
TGEV Purdue | AJ271965, Spain | Chinju99 | DQ845249, Korea |
HCoV-229E | AF304460, Germany | KPEDV-9 | AF015888, Korea |
CV777 | AF353511, Belgium | e1697 | FJ687454, Korea |
SM98 | GU937797, Korea | BIF118 | FJ687460, Korea |
attenuated DR13 | JQ023162,Korea | CPF259 | FJ687465, Korea |
Virulent DR13 | JQ023161, Korea | (d) N gene | |
LZC | EF185992, China | LJB/03 | DQ072726, China |
CH/S | JN547228, China | JS-2004-2 | AY653206, China |
CH/FJND-3/2011 | JQ282909, China | S | DQ355223, China |
BJ-2011-1 | JN825712, China | CH/IMB/06 | FJ473387, China |
CHGD-01 | JX261936, China | CH/JSX/06 | FJ473388, China |
(b) S gene | CH/HNCH/06 | FJ473389, China | |
Br1-87 | Z25483, France | CH/HLJH/06 | FJ473390, China |
NK | AB548623, Japan | CH/IMT/06 | FJ473391, China |
MK | AB548624, Japan | CH/HLJM/07 | FJ473393, China |
83P-5 | AB548618, Japan | CH/GSJ/07 | HM210880, China |
Kawahira | AB548622, Japan | CH/JL/09 | HM210881, China |
Chinju99 | AY167585, Korea | CH/GDS/09 | HM210882, China |
KNU-0801 | GU180142, Korea | CH/HLJQ/2010 | HQ455345, China |
KNU-0802 | GU180143, Korea | CH/HLJHG/2010 | HQ455346, China |
KNU-0901 | GU180144, Korea | BJ2010 | JF690780, China |
KNU-0902 | GU180145, Korea | Chinju99 | AF237764, Korea |
KNU-0903 | GU180146, Korea | 83P-5 | AB618615, Japan |
KNU-0904 | GU180147, Korea | (e) ORF3 gene | |
JS-2004-2 | AY653204, China | Br1/87 | Z24733, France |
DX | EU031893,China | CH/HNCH/06 | GU372738, China |
LJB-03 | DQ985739, China | CH/HLJH/06 | GU372732, China |
(c) M gene | CH/IMT/06 | GU372739, China | |
Br1/87 | Z24733, France | CH/GSJI/07 | GU372737, China |
JS-2004-2 | AY653205, China | CH/GSJII/07 | GU372742, China |
CH/HLJH/06 | EU033964, China | CH/HLJM/07 | GU372735, China |
CH/HNCH/06 | EU033963, China | CH/JL/08 | GU372734, China |
CH/JSX/06 | EU033967, China | CH/JL/09 | GU372741, China |
YM-2007 | EU302820, China | Chinju99 | EU792474, Korea |
QH | AY974335, China | PFF285 | HQ537449, Korea |
HB/GY | JN400910, China | PFF381 | HQ537451, Korea |
HB/LF | JN400909, China | PFF513 | HQ537452, Korea |
M_NIAH380_98 | EU581712, Thailand | PFF514 | HQ537453, Korea |
M_NIAH1795_04 | EU542415, Thailand | M1763 | HQ537438, Korea |
M_NIAH2013_95 | EU581711, Thailand | BI976 | HQ537433, Korea |
VN116 M5 | HQ883483, Vietnam |